DRSC/TRiP Functional Genomics Resources

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Protein Alignment sug and zic1

DIOPT Version :9

Sequence 1:NP_610826.1 Gene:sug / 36424 FlyBaseID:FBgn0033782 Length:384 Species:Drosophila melanogaster
Sequence 2:NP_571008.1 Gene:zic1 / 30096 ZFINID:ZDB-GENE-000208-4 Length:442 Species:Danio rerio


Alignment Length:369 Identity:113/369 - (30%)
Similarity:159/369 - (43%) Gaps:97/369 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 QKSIFNS------GPHSRGIYEPPLGYFTPYNTPPYIAAYSDSGSWL---------ADHHQHHQQ 54
            |.|:|.|      |||                      .:||:...|         |.|...:..
Zfish   112 QHSLFASAAGSFAGPH----------------------GHSDAAGHLLFPGLHEQAATHASSNVV 154

  Fly    55 QHQQ----------HQQQMQHIRFPTPPITPPRPIAGYGYRQRTQSVIMKAR---GQQDELCRSP 106
            ..|.          ..:|..|:..|.........:.|||    ..::.|.|.   |......|.|
Zfish   155 NSQMRLGFSGDMYGRAEQYGHVASPRSEHYASTQLHGYG----PMNMNMAAHHGAGAFFRYMRQP 215

  Fly   107 VEFPDDSKSCSSSSECGTASDFVCNWTD----------CDRVFDTLDALAQHVTQRHAIASLTDG 161
            ::                 .:.:|.|.:          |::.|.|:..|..|:|..| :......
Zfish   216 IK-----------------QELICKWIEPEQLTNPKKSCNKTFSTMHELVTHLTVEH-VGGPEQS 262

  Fly   162 LYYCRWRGCQRSERGFNARYKMLVHTRTHTKEKPHRCHL--CEKSFSRAENLKIHIRSHSGEKPY 224
            .:.|.|..|.|..:.|.|:||::.|.|.||.|||..|..  |.|.|:|:||||||.|:|:||||:
Zfish   263 NHICFWEECGREGKPFKAKYKLVNHIRVHTGEKPFPCPFPGCGKVFARSENLKIHKRTHTGEKPF 327

  Fly   225 KCSFEGCQKAYSNSSDRFKHTRTHSMEKPYMCKVAGCQKRYTDPSSLRKHVKTFKHSIHLIASQP 289
            ||.||||.:.::|||||.||...|:.:|||:||:  |.|.||.|||||||:|..:.|..  .|||
Zfish   328 KCEFEGCDRRFANSSDRKKHMHVHTSDKPYLCKM--CDKSYTHPSSLRKHMKVHESSSQ--GSQP 388

  Fly   290 LTLPS-------VPCLLEASSE--SAFTCLPAASSVESTSSSSS 324
            ....|       .|.::..|:|  |:.:..||:|:|..|||.|:
Zfish   389 SPAASSGYESSTPPTIVSPSTENQSSSSISPASSTVHHTSSHST 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sugNP_610826.1 C2H2 Zn finger 170..190 CDD:275368 8/19 (42%)
zf-H2C2_2 183..207 CDD:290200 11/25 (44%)
COG5048 192..>271 CDD:227381 45/80 (56%)
C2H2 Zn finger 198..218 CDD:275368 12/21 (57%)
zf-H2C2_2 210..237 CDD:290200 17/26 (65%)
C2H2 Zn finger 226..248 CDD:275368 12/21 (57%)
C2H2 Zn finger 256..277 CDD:275368 13/20 (65%)
zic1NP_571008.1 C2H2 Zn finger 269..291 CDD:275368 8/21 (38%)
zf-H2C2_2 284..310 CDD:290200 11/25 (44%)
C2H2 Zn finger 299..321 CDD:275368 12/21 (57%)
zf-H2C2_2 313..340 CDD:290200 17/26 (65%)
C2H2 Zn finger 329..351 CDD:275368 12/21 (57%)
zf-C2H2 357..379 CDD:278523 15/23 (65%)
C2H2 Zn finger 359..379 CDD:275368 14/21 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X217
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.910

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