DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmda1 and Tmbim7

DIOPT Version :9

Sequence 1:NP_523722.1 Gene:Nmda1 / 36419 FlyBaseID:FBgn0013305 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_083417.1 Gene:Tmbim7 / 75010 MGIID:1922305 Length:302 Species:Mus musculus


Alignment Length:247 Identity:100/247 - (40%)
Similarity:156/247 - (63%) Gaps:9/247 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    83 PPSAGGYGAY-----DD--PESQPKNFS--FDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYH 138
            |.:..|...|     :|  |.::..|.|  |::.|||..||.||:::|..||.:|...:.:||:.
Mouse    55 PRNRDGANTYAVQVSEDVTPSNETVNQSIPFENTSIRNDFIMKVFVVLSIQLFITAVIIGIFVFC 119

  Fly   139 EGTKTFARNNMWLFWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAP 203
            |..:.:.....|..:..|..:::.:..:|||..:|||.|.|:|.|..||..:..|:|..:..|..
Mouse   120 EPVRKWVIAKPWFLYALLPAVMILIFVLACCRDIRRQVPANYILLAFFTILEGLLLGSLSVFYRA 184

  Fly   204 KEVLMAVGITAAVCLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGKIITLVYASIG 268
            :|:|.|.|.|..|.|.||:||||||:|||::.|::.....|.||:||:|:.::...:.|||:::|
Mouse   185 EEILWAAGATTMVTLVLTLFALQTKWDFTLLNGVMFVFTSVLLIYGIIALVIRSYWLHLVYSALG 249

  Fly   269 ALLFSVYLIYDTQLMMGGEHKYSISPEEYIFAALNLYLDIINIFMYILTIIG 320
            .||||:||:.|.|:|:||.:.|.|:||||||||||:|:|||::|::||.:||
Mouse   250 TLLFSIYLVMDVQMMVGGRYHYEINPEEYIFAALNIYVDIISLFIFILDLIG 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmda1NP_523722.1 LFG_like 103..320 CDD:198410 92/218 (42%)
Tmbim7NP_083417.1 LFG_like 84..301 CDD:198410 91/216 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167831919
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0670
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57711
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000200
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100360
Panther 1 1.100 - - O PTHR23291
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R158
SonicParanoid 1 1.000 - - X332
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1110.740

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