DRSC/TRiP Functional Genomics Resources

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Protein Alignment Nmda1 and zgc:110410

DIOPT Version :9

Sequence 1:NP_523722.1 Gene:Nmda1 / 36419 FlyBaseID:FBgn0013305 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_001315301.1 Gene:zgc:110410 / 553618 ZFINID:ZDB-GENE-050522-465 Length:405 Species:Danio rerio


Alignment Length:367 Identity:150/367 - (40%)
Similarity:200/367 - (54%) Gaps:52/367 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 QSVPQY-PQYQDPNQQYNYGGG------NPPQG--GYGGYPP--QG--GYP------------PQ 43
            ||.|.| |.|..|......|..      |..||  ||..||.  ||  |||            ||
Zfish    44 QSPPSYNPYYPPPYPNSTQGNAGYPHYPNATQGNAGYPQYPNAIQGNAGYPQYPNATQGNAGYPQ 108

  Fly    44 GP-----PQGYPPY---AQGGAQPYPQPY------GQGPPPGGYAPQPGFIQPPPSAGGYGAYDD 94
            .|     ..|||.|   .||.| .||| |      ..|.||.|..|..|.:  ||:|.... ..:
Zfish   109 YPNAIQGNAGYPQYPNATQGNA-GYPQ-YPNATQGNAGHPPMGMMPLAGMM--PPTAENVN-MGN 168

  Fly    95 PESQPKNFS--------FDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWL 151
            |:..|..::        |.|.:|||||||||||.||.||::|.|.:..|:|.|....:.::..|.
Zfish   169 PDDAPPEYTLGFENENCFSDAAIRRGFIRKVYLTLMIQLLITVGIICAFLYWETLSDWVKDTYWF 233

  Fly   152 FWVALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLMAVGITAAV 216
            .:..:||....::.:.||..:||:.|.|||||||||.|:..|:|.....|:.:.||.|||.||.|
Zfish   234 TYTMMGVTFALVIVLVCCVDIRRKVPLNFIFLGLFTIAEGCLLGSVVVYYSAEAVLWAVGATALV 298

  Fly   217 CLALTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGKIITLVYASIGALLFSVYLIYDTQ 281
            .||:::|:||:|:|||...|.:.|.......|.::...::.:.:.:.|||:|.|:|||||:.|||
Zfish   299 SLAMSLFSLQSKWDFTAASGCIWAMSWTLFSFALLCAILRSQYLYIFYASLGTLIFSVYLVIDTQ 363

  Fly   282 LMMGGEHKYSISPEEYIFAALNLYLDIINIFMYILTIIGASR 323
            |::||:||||||||||||||||||:||:.||:.:|.:||..|
Zfish   364 LILGGKHKYSISPEEYIFAALNLYIDIVTIFLLLLQLIGFCR 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Nmda1NP_523722.1 LFG_like 103..320 CDD:198410 102/224 (46%)
zgc:110410NP_001315301.1 Bindin 89..>171 CDD:251078 28/86 (33%)
LFG_like 186..402 CDD:198410 102/215 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170574767
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1290306at2759
OrthoFinder 1 1.000 - - FOG0000200
OrthoInspector 1 1.000 - - otm25342
orthoMCL 1 0.900 - - OOG6_100360
Panther 1 1.100 - - O PTHR23291
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X332
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
87.850

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