DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lfg and AT4G15470

DIOPT Version :10

Sequence 1:NP_725236.1 Gene:Lfg / 36418 FlyBaseID:FBgn0025692 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_567466.1 Gene:AT4G15470 / 827218 AraportID:AT4G15470 Length:256 Species:Arabidopsis thaliana


Alignment Length:221 Identity:75/221 - (33%)
Similarity:116/221 - (52%) Gaps:12/221 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AFDDQSIRKGFIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQKNPALFWIALAVLIVTMICMA 87
            ::.:..:|.|||||||.||..|||:|....:|...:....:.:..:|.   |.|.:.||..|.:.
plant    39 SYGENQLRWGFIRKVYGILSAQLLLTTLISAVVVLNPPVNDLLTGSPG---ILLFLCIVPFILIW 100

  Fly    88 CCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLF---ALQTKY 149
            ......:|.|:|.|.|.||||:.||.:|:.....|...||.|:.:|.:|...||.:   |.:...
plant   101 PLHIYHQKHPVNLILLALFTVSLSFTVGVSCAMTEGRIVLQALILTLSVVGSLTAYTFWAAKKGK 165

  Fly   150 DFTMCGGVLVACLVVFIIFGIIAIFIP-GKVIGLVYASLGALLFSVYLVYDTQLMLGGNHKYSIS 213
            ||:..|.:|...|::.::...|.:|.| |.....||....||:|..|:||||..::     ...:
plant   166 DFSFLGPILFTSLIILVVTSFIQMFFPLGPTSVAVYGGFSALVFCGYIVYDTDNLI-----KRFT 225

  Fly   214 PEEYIFAALNLYLDIINIFMYILTII 239
            .:|||.|::.|||||:|:|:.||.|:
plant   226 YDEYILASVALYLDILNLFLTILRIL 251

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LfgNP_725236.1 LFG_like 23..240 CDD:198410 75/221 (34%)
AT4G15470NP_567466.1 GAAP_like 16..255 CDD:198411 75/221 (34%)

Return to query results.
Submit another query.