DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lfg and TMBIM4

DIOPT Version :9

Sequence 1:NP_725236.1 Gene:Lfg / 36418 FlyBaseID:FBgn0025692 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_001269535.1 Gene:TMBIM4 / 51643 HGNCID:24257 Length:285 Species:Homo sapiens


Alignment Length:226 Identity:82/226 - (36%)
Similarity:128/226 - (56%) Gaps:24/226 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 QSIRKG----------FIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQKNPA---LFWIALAV 78
            ||.|.|          |:||||.||..|:|:|....:||.:.::.:.:|.::||   ||.:....
Human    65 QSGRSGMVNIFYKGPTFLRKVYSILSLQVLLTTVTSTVFLYFESVRTFVHESPALILLFALGSLG 129

  Fly    79 LIVTMICMACCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALGLTLF 143
            ||..:|..      |.|.|||...||.||:.|:..:.:|...::...:|.|..:|..|..|||::
Human   130 LIFALILN------RHKYPLNLYLLFGFTLLEALTVAVVVTFYDVYIILQAFILTTTVFFGLTVY 188

  Fly   144 ALQTKYDFTMCGGVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLMLGGNH 208
            .||:|.||:..|..|.|.|.:..:.|.:..|...:::.||.|:.|||||..:::|||..::   |
Human   189 TLQSKKDFSKFGAGLFALLWILCLSGFLKFFFYSEIMELVLAAAGALLFCGFIIYDTHSLM---H 250

  Fly   209 KYSISPEEYIFAALNLYLDIINIFMYILTII 239
            |  :|||||:.||::|||||||:|:::|..:
Human   251 K--LSPEEYVLAAISLYLDIINLFLHLLRFL 279

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LfgNP_725236.1 LFG_like 23..240 CDD:198410 82/226 (36%)
TMBIM4NP_001269535.1 GAAP_like 6..283 CDD:198411 82/226 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0670
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S2307
OMA 1 1.010 - - QHG57711
OrthoDB 1 1.010 - - D1290306at2759
OrthoFinder 1 1.000 - - FOG0000200
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100360
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R158
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
87.710

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