DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lfg and Nmda1

DIOPT Version :9

Sequence 1:NP_725236.1 Gene:Lfg / 36418 FlyBaseID:FBgn0025692 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_523722.1 Gene:Nmda1 / 36419 FlyBaseID:FBgn0013305 Length:324 Species:Drosophila melanogaster


Alignment Length:235 Identity:168/235 - (71%)
Similarity:204/235 - (86%) Gaps:1/235 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 GAYTDAEAD-KSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQKNPALFWI 74
            |||.|.|:. |:|:|||||||:|||||||||||.||::|||.|::|.:.:.::.:.:.|..|||:
  Fly    90 GAYDDPESQPKNFSFDDQSIRRGFIRKVYLILMGQLIVTFGAVALFVYHEGTKTFARNNMWLFWV 154

  Fly    75 ALAVLIVTMICMACCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVLMAVGITAAVALG 139
            ||.|::|||:.|||||||||:||.|||||.|||.|:|||:|:.|.::...||||||||||||.|.
  Fly   155 ALGVMLVTMLSMACCESVRRQTPTNFIFLGLFTAAQSFLMGVSATKYAPKEVLMAVGITAAVCLA 219

  Fly   140 LTLFALQTKYDFTMCGGVLVACLVVFIIFGIIAIFIPGKVIGLVYASLGALLFSVYLVYDTQLML 204
            ||:|||||||||||.||:|:||:|||:||||:|||:.||:|.|||||:|||||||||:||||||:
  Fly   220 LTIFALQTKYDFTMMGGILIACMVVFLIFGIVAIFVKGKIITLVYASIGALLFSVYLIYDTQLMM 284

  Fly   205 GGNHKYSISPEEYIFAALNLYLDIINIFMYILTIIGLSRN 244
            ||.|||||||||||||||||||||||||||||||||.||:
  Fly   285 GGEHKYSISPEEYIFAALNLYLDIINIFMYILTIIGASRD 324

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LfgNP_725236.1 LFG_like 23..240 CDD:198410 157/216 (73%)
Nmda1NP_523722.1 LFG_like 103..320 CDD:198410 157/216 (73%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439702
Domainoid 1 1.000 127 1.000 Domainoid score I1747
eggNOG 1 0.900 - - E1_COG0670
Homologene 1 1.000 - - H41517
Inparanoid 1 1.050 129 1.000 Inparanoid score I1887
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D104229at33392
OrthoFinder 1 1.000 - - FOG0000200
OrthoInspector 1 1.000 - - mtm6588
orthoMCL 1 0.900 - - OOG6_100360
Panther 1 1.100 - - P PTHR23291
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R158
SonicParanoid 1 1.000 - - X332
1312.830

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