DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lfg and Y42H9AR.2

DIOPT Version :9

Sequence 1:NP_725236.1 Gene:Lfg / 36418 FlyBaseID:FBgn0025692 Length:244 Species:Drosophila melanogaster
Sequence 2:NP_501350.3 Gene:Y42H9AR.2 / 189842 WormBaseID:WBGene00021537 Length:257 Species:Caenorhabditis elegans


Alignment Length:240 Identity:84/240 - (35%)
Similarity:132/240 - (55%) Gaps:11/240 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 DETGAYTDAEADKSFAFDDQSIRKGFIRKVYLILMCQLLITFGFVSVFTFSKASQEWVQKNPALF 72
            :|.|...|...  .|.|||:|||..|:.||:.::.....||..|.:|..::|..::|..:... :
 Worm    20 NEEGPKDDIAV--QFGFDDRSIRAAFVAKVFALVTVMFAITAAFSAVPIYNKDFKKWCNQEDH-W 81

  Fly    73 W---IALAVLIVTMICMACCESVRRKTPLNFIFLFLFTVAESFLLGMVAGQFEADEVLMAVGITA 134
            |   :|:.|..:..|.:.||...||..|.|...|..||.:.:.:...:...:.||.||:::.||.
 Worm    82 WCVYVAMGVFFIFYITLMCCGRARRCFPCNLFILTCFTFSAATMTMFITATYSADAVLISLLITT 146

  Fly   135 AVALGLTLFALQTKYDFTMCGGVLVACLVVFIIFGIIA----IFIPGKVIGLVYASLGALLFSVY 195
            ..:..:.|||..||.|.|.|.||.....:..::||::|    ||:..:.:.:|||.|||||...|
 Worm   147 GCSASIILFAATTKKDLTSCLGVAFILGICLMLFGLMACIFCIFLNWQFLYIVYAVLGALLCMFY 211

  Fly   196 LVYDTQLMLGGNHKYSISPEEYIFAALNLYLDIINIFMYILTIIG 240
            |..|.||::|| .:..||||||||||.::::||:.:|:.||.::|
 Worm   212 LAIDIQLIMGG-RRVEISPEEYIFAATHVFVDILGMFLNILGVVG 255

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LfgNP_725236.1 LFG_like 23..240 CDD:198410 79/223 (35%)
Y42H9AR.2NP_501350.3 LFG_like 33..255 CDD:198410 79/223 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 146 1.000 Domainoid score I2788
eggNOG 1 0.900 - - E1_COG0670
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG57711
OrthoDB 1 1.010 - - D1290306at2759
OrthoFinder 1 1.000 - - FOG0000200
OrthoInspector 1 1.000 - - mtm4835
orthoMCL 1 0.900 - - OOG6_100360
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R158
SonicParanoid 1 1.000 - - X332
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1110.760

Return to query results.
Submit another query.