DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and Angpt1

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_006241671.1 Gene:Angpt1 / 89807 RGDID:628896 Length:498 Species:Rattus norvegicus


Alignment Length:494 Identity:126/494 - (25%)
Similarity:217/494 - (43%) Gaps:100/494 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 EEESGSQEANQEQ---TGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHHIDERVRS 358
            |.:...:|:..||   ..|:..|.|....  |.|:::..|:....|..:.:..|. ::|.|.::|
  Rat    49 EHDGNCRESATEQYNTNALQRDAPHVETD--FSSQKLQHLEHVMENYTQWLQKLE-NYIVENMKS 110

  Fly   359 --IEVEQHRIAN-------ANFNLSSQIA----SLDKLHTSML--------ELLEDVEGLQT-KM 401
              .:::|:.:.|       ...:|.||.|    .|..:.|.:|        :|||:  .|.| |:
  Rat   111 EMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLEN--SLSTYKL 173

  Fly   402 DKSIPELRHEISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQ 466
            :|.:.:..:||.|::..|:.:  |..::..||.:..        .:..|:||:|.::.|      
  Rat   174 EKQLLQQTNEILKIQEKNSLL--EHKILEMEGKHKE--------ELDTLKEEKENLQGL------ 222

  Fly   467 LRTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQY 531
                |.| |:.:..|::.:|:       |..:.|...|..|.:      |.:| |..|.::.|:.
  Rat   223 ----VTR-QTFIIQELEKQLS-------RATNNNSVLQKQQLE------LMDT-VHNLVSLCTKE 268

  Fly   532 EAII-------NKLPHDCSEVHT---QTDGLHLIAPAGQRHPLMTHCTAD----GWTTVQRRFDG 582
            ..::       .|...||::|:.   ...|::.|.......|....|..|    |||.:|.|.||
  Rat   269 GVLLKGGKREEEKPFRDCADVYQAGFNKSGIYTIYFNNMPEPKKVFCNMDVNGGGWTVIQHREDG 333

  Fly   583 SADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRA 647
            |.||.|.|.:|..|||.|.||:|:|||.:..:|......|::::.|...|...::|.||:|.:..
  Rat   334 SLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQYDRFHIGNEK 398

  Fly   648 DGYRLHIAEYSGNASDALN-YQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRYNL 711
            ..|||::..::|.|....: ...|..||..|.|.|.....||....|||||..|..:||||.:  
  Rat   399 QNYRLYLKGHTGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGPSNLNGMF-- 461

  Fly   712 GLTWFDAARN-------EW-------IAVKSSRMLVKRL 736
                :.|.:|       :|       .:::|:.|:::.|
  Rat   462 ----YTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 1/2 (50%)
FBG 538..736 CDD:214548 67/219 (31%)
Angpt1XP_006241671.1 COG4372 <55..>255 CDD:226809 51/238 (21%)
FReD 281..496 CDD:238040 68/220 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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