DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and Tnxb

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_006525248.1 Gene:Tnxb / 81877 MGIID:1932137 Length:4361 Species:Mus musculus


Alignment Length:894 Identity:188/894 - (21%)
Similarity:297/894 - (33%) Gaps:271/894 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 DAKVVTSEK--PVVHSKQETEAPESSVELLRFVDDDEDSEDISSIERQDGRTMESKKMADQVRLL 130
            :||.|:..|  |.:.....|:..::||.|...|.:.|....:...:.:.|:.......|||    
Mouse  3466 EAKTVSDAKLLPRLGELTVTDTTQNSVGLSWTVPEGEFDSFLVQYKNRGGQVQVVPAAADQ---- 3526

  Fly   131 TKQLNALMLRRREDYEMLEHNLRKSLRL--------TTNANSVDADMRSELNQLREELAALRSSQ 187
             :::....|.....|..|...|....||        |............||:...|...::..|.
Mouse  3527 -REVTISSLEPNRKYRFLLFGLIGLKRLGPVSVEGTTAPVEKTPQPRLGELSVTEETSDSMHLSW 3590

  Fly   188 S--------------------------GNKERLTVEWLQQ-----------TISEIRKQLVDLQR 215
            |                          .::..:|:|.||.           |..:....:..|..
Mouse  3591 SVAQGPFDSFLVQYKDRDGQLQTVSLAADQREVTIEGLQPGRKYKFLLYGLTGGKRLGPISALGV 3655

  Fly   216 TASNVAQDVQQRSST-------FEDLATIRSDYQQLKLDLAAQR-------ERQQQTEVYVQELR 266
            |||.|  |:.....|       ...||...:....|:|..|..|       .:.|.||...|.| 
Mouse  3656 TASEV--DISAPDHTEPPHAPGLGTLAVTEATPDSLRLSWAVARGPFDSFVVQYQDTENETQAL- 3717

  Fly   267 EEMLQQEQD------------FQHALVKLQQRTRK-----DGSSASVEEESGSQEANQEQTGL-- 312
              ::..:||            ::..|..|::.||.     :|::..|....|..:.....:.|  
Mouse  3718 --LVDGDQDKVLISGLEPKTSYKFFLYGLREGTRHGPVSVEGTTDPVPAGQGPGDPGPRLSQLSV 3780

  Fly   313 -ETTADHKRRH------------CRFQSEQIHQLQLAQRNLRRQ---VNGLRFHHIDERVR---- 357
             :.|....|.:            .||....:..|:...|.|:::   |.|:|...:...:|    
Mouse  3781 SDVTTSSLRLNWEAPLGAFDSFLLRFGVPLLSTLEQNPRTLQQRELMVPGVRRSAMLRDLRPGTL 3845

  Fly   358 -SIEVEQHRIANANFNLSSQIASLDKLHTSMLEL-LEDVEGLQTKMDKSIPELRHEISKLEFANA 420
             |:.:...|..:...::.....:|..:..|..:| ..|:.....|:....|..|.:..|:.:..|
Mouse  3846 YSLTLYGLRGPHKADSIQGTARTLSPVLESPRDLQFSDIGETSAKVKWVPPTSRVDSFKISYQLA 3910

  Fly   421 QITSEQSLIREEGTNAARSLQAM----AVSVSVLQ----EEREGMRKLSANV----DQLRTNVDR 473
            .....|| ::.:|....:.||.:    ...|:|:.    ||.|.:......|    .|||.    
Mouse  3911 DGGEPQS-VQVDGRTQTQILQGLIPDTRYEVTVVSVRGFEESEPLTGFLTTVPDGPTQLRA---- 3970

  Fly   474 LQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMP-----QDDSP---IDSVLAETLVSELENVETQ 530
                :|....:.|.|...|||.....:|:.:.|     |..:|   :|..|.:..      ::|.
Mouse  3971 ----LNLTDGSALLHWKPPHKPVDKYDVEVESPGAPPLQASAPGSAVDYPLTDLA------LDTN 4025

  Fly   531 YEAIIN-------------------KLPHD--CSEVHTQTDGL---------------------- 552
            |.|.:.                   |.|.|  ..||..:|..|                      
Mouse  4026 YTATVRGLRGPNFTSPASITFTTGLKPPQDLEAKEVTPRTALLTWTEPEVPPTGYLLSFDTPGGQ 4090

  Fly   553 --HLIAPAG-------------------------------------------------------- 559
              .::.|||                                                        
Mouse  4091 IQEILLPAGTTSHRLLRLFPSTFYSAQLRAIWGESLTPPVLTSFTTGGLRIPFPRDCGEELKNGP 4155

  Fly   560 -------------QRHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIG 607
                         :..||...|..:    ||...|||.||..||.|.|.:||.|||...||||:|
Mouse  4156 SASKTTTIFLNGNRERPLDVFCDMETDGGGWLVFQRRMDGQTDFWRDWEEYAHGFGNISGEFWLG 4220

  Fly   608 NEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDALNYQQGMQ 672
            ||.||.||......|:|.::...:.|: |:|..|.:.|..:.||||:..|.|.|.|:::|..|..
Mouse  4221 NEALHSLTQAGDYSLRVDLRAGKEAVF-AQYDFFRVDSAKENYRLHLEGYHGTAGDSMSYHSGSV 4284

  Fly   673 FSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRY-----NLGLTWF 716
            |||.|.|.:.....||.:|.|.||:.:|.:|||||.|     :.|::|:
Mouse  4285 FSARDRDPNNLLISCAVSYRGAWWYRNCHYANLNGLYGSTVDHQGVSWY 4333

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 28/141 (20%)
FBG 538..736 CDD:214548 76/283 (27%)
TnxbXP_006525248.1 EGF_2 172..200 CDD:285248
EGF_2 203..231 CDD:285248
EGF_Tenascin 236..262 CDD:376143
EGF_Tenascin 267..293 CDD:376143
EGF_Tenascin 298..325 CDD:376143
EGF_Tenascin 329..356 CDD:376143
EGF_Tenascin 360..386 CDD:376143
EGF_2 389..417 CDD:285248
EGF_Tenascin 422..448 CDD:376143
EGF_2 451..479 CDD:285248
EGF_2 482..510 CDD:285248
DSL <498..541 CDD:366627
EGF_2 541..572 CDD:285248
EGF_Tenascin 577..604 CDD:376143
EGF_2 608..634 CDD:285248
EGF_Tenascin 639..665 CDD:376143
EGF_Tenascin 706..732 CDD:376143
fn3 737..818 CDD:365830
fn3 830..906 CDD:365830
fn3 1074..1142 CDD:365830
fn3 1295..1369 CDD:365830
FN3 1386..1466 CDD:238020
fn3 1484..1558 CDD:365830
fn3 1599..1674 CDD:365830
fn3 1707..1782 CDD:365830
fn3 1804..1874 CDD:365830
fn3 1904..1971 CDD:365830
fn3 2000..2067 CDD:365830
fn3 2102..2164 CDD:365830
FN3 2211..2279 CDD:238020
fn3 2315..2393 CDD:365830
fn3 2426..2496 CDD:365830
fn3 2525..2600 CDD:365830
fn3 2639..2709 CDD:365830
fn3 2748..2823 CDD:365830
fn3 2861..2931 CDD:365830
fn3 2970..3043 CDD:365830
fn3 3076..3146 CDD:365830
fn3 3183..3258 CDD:365830
fn3 3291..3361 CDD:365830
fn3 3387..3462 CDD:365830
fn3 3480..3542 CDD:365830 12/66 (18%)
fn3 3569..3649 CDD:365830 10/79 (13%)
fn3 3679..3752 CDD:365830 17/75 (23%)
fn3 3776..3855 CDD:365830 13/78 (17%)
fn3 3875..3953 CDD:365830 17/78 (22%)
FN3 3962..4048 CDD:238020 18/99 (18%)
fn3 4052..4129 CDD:365830 9/76 (12%)
Fibrinogen_C 4143..4352 CDD:278572 67/192 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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