DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and fgl1b

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_017213536.1 Gene:fgl1b / 563523 ZFINID:ZDB-GENE-130530-668 Length:348 Species:Danio rerio


Alignment Length:373 Identity:105/373 - (28%)
Similarity:157/373 - (42%) Gaps:83/373 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   429 IREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKP- 492
            :.||||  :||:....|.:.:.    ..:..|.|:..      :..||....::|.::..||.. 
Zfish     4 LEEEGT--SRSVMPQLVFILIC----HALTLLQASAG------EECQSYEMSKLKEEIRMLNNKL 56

  Fly   493 --------HKRPHHQ-------NVQAQMPQDD----SP-IDSVLAETLVSELENVETQYEAIINK 537
                    |.|.|.:       .:|...|.::    || :.|.....||.:              
Zfish    57 LIGEWKVMHLRTHRKFRLVPNLELQENKPSENNTEPSPTLPSTGGSLLVHD-------------- 107

  Fly   538 LPHDCSEVHTQ---TDGLHLIAPAGQRHPLMTHCTAD---GWTTVQRRFDGSADFNRSWADYAQG 596
              .||||::.:   ..|.:.|.|.....|.:.:|..|   .||.:|:|.:|..||:|.|.||..|
Zfish   108 --KDCSELYDRLKPVSGFYRIKPKPLLEPFLVYCDMDDGGAWTVIQKRINGKVDFDRKWEDYKNG 170

  Fly   597 FG---APGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYS 658
            ||   :...|||:||:.:|.|..|..|.:::.:.|.......|.|..|.:|...|.|||:...||
Zfish   171 FGNFQSSKDEFWLGNDHIHVLLSDGDSVMKIDLTDWKGGKSYAMYDNFKVSDEKDKYRLYYGMYS 235

  Fly   659 GNASDALN-----------YQQGMQFSAIDDDRD-ISQTHCAANYEGGWWFSHCQHANLNGR--- 708
            |.|.|||:           ...|||||..|.|.| ..|..|||..:||||::.|..||||||   
Zfish   236 GQAGDALSGGANMVEQWSASHNGMQFSTRDQDHDRYLQGSCAAENKGGWWYNRCHAANLNGRFYR 300

  Fly   709 -------YNLGLTWFDAARNEWIAVKSSRMLVKRLPAVECQANASASG 749
                   |:.|:.| ...:..|.:::.:.|.|:  |:....:..|..|
Zfish   301 GGEYKAKYDNGIVW-STWKGLWYSLRHTVMKVR--PSSHMDSVGSGGG 345

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 78/228 (34%)
fgl1bXP_017213536.1 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.