DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and angptl3

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_001011408.1 Gene:angptl3 / 496885 XenbaseID:XB-GENE-6258790 Length:456 Species:Xenopus tropicalis


Alignment Length:436 Identity:114/436 - (26%)
Similarity:189/436 - (43%) Gaps:93/436 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   375 SQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLEFANAQIT--SEQSLIREEGTNAA 437
            |:.|.||.:......||:...||:..:.|:..::.....||...:..:|  |||       ||..
 Frog    32 SRFAMLDDVRILANGLLQLGHGLKDFVHKTKGQINEIFQKLNIFDKSVTDLSEQ-------TNEI 89

  Fly   438 RSL-QAMAVSVSVLQEEREGM----RKLSANVDQLRTNVDRLQSLVN------------------ 479
            |.. :.:..:.|.|||..|.:    ||:::.|:.|..:...||:.|.                  
 Frog    90 REKEEELKDTTSKLQENNEELKNISRKINSQVENLLQDKIHLQAKVGSLEEKLFQMTQGTTEGQE 154

  Fly   480 ----DEMKN-------KLTHLNK----PHKRPHHQNVQAQMPQD-------DSPIDSVLAE---- 518
                ..:||       .:.||.|    .|.:..|||||.:..:|       ...:.||||.    
 Frog   155 IKEISSLKNFVEQQDVNIRHLLKVVQEQHMQLDHQNVQIKDLEDKLSKADLQESVKSVLAVRRSR 219

  Fly   519 ----TLVSELENVETQYEAIINKLPHDCSEVHT---QTDGLHLIAPAGQRHPLMTHC--TADGWT 574
                .|.:..:.:..|.::      .||::::.   ::.|::.|.|.|.. ....:|  |::...
 Frog   220 TGFLNLSNSTDGMVEQNDS------RDCNDIYNRGERSSGIYTIRPNGST-AFDVYCEITSESAN 277

  Fly   575 TV-QRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEY 638
            || |||.|||.|||::|..|..|||...||||:|.|::|.::......|.:::||..:|....||
 Frog   278 TVIQRRTDGSVDFNQTWETYLNGFGELTGEFWLGLEKIHAISQQADYILHIELQDWKENWRFVEY 342

  Fly   639 KRFYISSRADGYRLHIAEYSGNASDALNYQQGMQFSAIDDDRDISQTHC-AANYEGGWWFSHCQH 702
             .|.:.::...|.|.:.:.|||...||..|:.:.||.  .|::.....| |..:.||||.:.|..
 Frog   343 -MFTLGNQDTSYALQLTQVSGNIPSALPEQREILFST--SDQNSGDLKCPAETFSGGWWNTACSG 404

  Fly   703 ANLNGRY-------------NLGLTWFDAARNEWIAVKSSRMLVKR 735
            .||||:|             ..|:.| .:.:....::||:::::.|
 Frog   405 TNLNGKYIKQRPRTKLDRRRGQGIYW-KSEKGRLYSLKSTKIMLYR 449

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 66/218 (30%)
angptl3NP_001011408.1 SMC_N <58..>206 CDD:330553 34/154 (22%)
FReD 239..447 CDD:238040 65/212 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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