DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and LOC4576360

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_001231036.3 Gene:LOC4576360 / 4576360 VectorBaseID:AGAMI1_008832 Length:309 Species:Anopheles gambiae


Alignment Length:278 Identity:90/278 - (32%)
Similarity:138/278 - (49%) Gaps:37/278 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   477 LVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDD--SPIDSVLAETLVSELENVETQYEAIINKLP 539
            ||.:|: |.|.||      ...:.||.|....|  |.|||::.       :...|....:.|:..
Mosquito    43 LVMNEL-NLLGHL------IIEKEVQLQSKLYDLSSKIDSLMQ-------QKCNTTTLPVFNETK 93

  Fly   540 HD----CSEVHTQTDGLHLIAPAGQ-RHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQ 595
            .|    |.|  |.|.|:::|.|... :.|:...|..:    ||..:|.|||||.:|.|:|.:|..
Mosquito    94 DDVYRSCKE--TPTTGVYMIQPEKPFKEPITVLCDQEYESGGWIVIQHRFDGSTNFYRNWKEYKN 156

  Fly   596 GFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRL-HIAEYSG 659
            |||...||||:|.::::.||:.....|.|.::|...|...|.|.:|.|:.....|.| .|..:||
Mosquito   157 GFGNLDGEFWLGLDRIYQLTVSQPYELVVLLEDFDGNKTFARYDQFEIADENQMYMLSKIEGFSG 221

  Fly   660 NASDALNYQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRY--------NLGLTWF 716
            .|.|:|...:||:||.:|.|.||::..||..:.|.||::.|..:||||:|        ..|:.| 
Mosquito   222 PAGDSLGNAKGMKFSTLDSDNDIAKDSCAVTFTGAWWYNACHASNLNGQYLRGETTECGKGMVW- 285

  Fly   717 DAARNEWIAVKSSRMLVK 734
            |..|....::|.::|:::
Mosquito   286 DTFRGHCHSLKMAKMMIR 303

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175 3/7 (43%)
FBG 538..736 CDD:214548 73/215 (34%)
LOC4576360XP_001231036.3 None

Return to query results.
Submit another query.