DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and col11a2l

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_001005799.1 Gene:col11a2l / 448277 XenbaseID:XB-GENE-12564499 Length:340 Species:Xenopus tropicalis


Alignment Length:156 Identity:62/156 - (39%)
Similarity:83/156 - (53%) Gaps:6/156 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   563 PLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQ 623
            |:...|..|    ||...|||.|||.||.|.|..|.||||:...|||:|||.:|.||.....:|:
 Frog   153 PIKVLCDMDTDGGGWIVFQRRVDGSVDFYRDWKSYKQGFGSQLSEFWLGNENIHRLTSSGNFQLR 217

  Fly   624 VQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGN-ASDALNYQQGMQFSAIDDDRD-ISQTH 686
            ..::|..:|...|.|.:|.:...:..|.|...|::|. |.|:|...:...||..|.|.| .|:|:
 Frog   218 FDLEDFDNNRTYATYSQFRLEPESQNYTLRFREFTGGPAGDSLFTHKDRAFSTKDADNDPASKTN 282

  Fly   687 CAANYEGGWWFSHCQHANLNGRYNLG 712
            ||..|:|.||:..|.|:.|||.|..|
 Frog   283 CAERYKGAWWYESCYHSCLNGEYMRG 308

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175
FBG 538..736 CDD:214548 62/156 (40%)
col11a2lNP_001005799.1 Collagen 48..110 CDD:460189
FReD 128..338 CDD:238040 62/156 (40%)
Blue background indicates that the domain is not in the aligned region.

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