DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and CG10359

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_001137882.1 Gene:CG10359 / 38434 FlyBaseID:FBgn0035452 Length:485 Species:Drosophila melanogaster


Alignment Length:555 Identity:126/555 - (22%)
Similarity:195/555 - (35%) Gaps:171/555 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   225 QQRS---STFEDLAT----IRSDYQQLKLDL-----------AAQRERQQQTEVYVQEL------ 265
            |.||   :.|..:||    .|.||::|..:|           ..||.|.:..:..:.:|      
  Fly    46 QTRSRIPNNFRSIATPPIAPRCDYKELMTNLHDRVGILVTLDEDQRHRLEVIDKKLDQLVESSSA 110

  Fly   266 -REEMLQQEQDFQHALVKLQQRTRKDGSSASVEEESGSQEANQEQTGLETTADHKRRHCRFQSEQ 329
             .|.|..|:.||.|.|...:...|.  |..:::|..|  |.:|.                |....
  Fly   111 RMESMKAQQLDFLHRLDSFEHIQRL--SRNTLDELKG--ETDQV----------------FGPRN 155

  Fly   330 IHQLQLAQRNLRRQVNGLRFHHIDERVRSIEVEQH------RIANANFNLSSQIASLDKLHTSML 388
            :.:|:...||.::..:      |...||.:..||:      ....:|.||||:   ||.|.|.:.
  Fly   156 VRELKHKLRNRKKMKD------ISRTVRDVSQEQYPSSGIGTFNESNLNLSSR---LDALATLLA 211

  Fly   389 ELLEDVEGLQTKMDKSIPELRHEISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEE 453
            .....|..:|.           |::.|..|   |..:..||:.:|..:....|.:....|     
  Fly   212 STALSVRSVQV-----------EVANLSRA---IRRQSRLIQGKGLRSTPGQQPIFYGPS----- 257

  Fly   454 REGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAE 518
                                              .||.|                          
  Fly   258 ----------------------------------GLNGP-------------------------- 262

  Fly   519 TLVSELENVETQYEAIINKLPHDCSEVHTQTDGLHLIAPAGQRHPLMTHCTADGWTTVQRRFDGS 583
                          ....:||..||.......|:..:....:.......|..| ||.:..|....
  Fly   263 --------------TATRQLPSSCSYSFLSNHGILKVQLTPESESFYVSCDED-WTVILSRTSDD 312

  Fly   584 ADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRAD 648
            .:|.|.|.||..|||...|:|:||..:||.||......|::.|:|...||..|.|..|.|.|..:
  Fly   313 VNFERGWLDYRDGFGNLAGDFFIGLNKLHALTSSALHELRIVMEDFSGNVAYAGYSLFAIGSEKE 377

  Fly   649 GYRL-HIAEYSGN----ASDALNYQQGMQFSAIDDDRD-ISQTHCAANYEGGWWFSHCQHANLNG 707
            .|.| .:.::..|    |.|:|:|..|.:||.:|.|.| ..:.:||..::|..||::|..:||.|
  Fly   378 LYPLVLLGKFQDNLTPSAGDSLSYHAGAKFSTVDQDNDNCLECNCALRHKGAGWFNNCAKSNLFG 442

  Fly   708 RYNL----GLT--WFD--AARNEWIAVKSSRMLVK 734
            .|..    |.|  |:|  :.:|   ::|..|.:::
  Fly   443 EYTTQNQPGETGIWWDTFSGQN---SLKRVRWMIR 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 25/99 (25%)
FBG 538..736 CDD:214548 66/211 (31%)
CG10359NP_001137882.1 FReD 267..476 CDD:238040 66/212 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14151
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.910

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