DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and fgb

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_997939.1 Gene:fgb / 337315 ZFINID:ZDB-GENE-030131-9261 Length:485 Species:Danio rerio


Alignment Length:417 Identity:94/417 - (22%)
Similarity:162/417 - (38%) Gaps:107/417 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   382 KLHTSMLELLEDVEGLQTKMDKSIPELRHEISKL---------EFANAQITSE-QSLIREEGTNA 436
            :|..::::...:|:....::.:::.:|....:.:         |.|..|..|| ..|:.::.|::
Zfish   106 ELKKALIKQERNVKPTVEQLKRAVDDLTQSTNSIHGYVLDMTAEVAQRQKVSEGNGLVVDQYTDS 170

  Fly   437 ARSLQAM---AVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKPHKRPHH 498
            ..:..|.   .|.|:..|    .::.|...:|::|..:.||:..:..                  
Zfish   171 LETQHAYIKDTVDVTFPQ----NIKVLQGVLDKIREKIQRLEKAITT------------------ 213

  Fly   499 QNVQAQMP-QDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVHTQTDGLHLIAPAGQRH 562
            |..:.|.| :...||..|..:           :.|.||.|...|..        :::|.|.....
Zfish   214 QRAKCQAPCKVTCPIPVVSGK-----------ECEDIIRKGGEDSQ--------MYIIRPDPLGT 259

  Fly   563 PLMTHCTA----DGWTTVQRRFDGSADFNRSWADYAQGFG------------APGGEFWIGNEQL 611
            |....|..    .||..:|.|.|||.||.|.|.||.:|||            .| ||:|:||:::
Zfish   260 PYKVFCDQTSKNGGWVLIQNRMDGSVDFGRRWDDYRRGFGNIAFDVGKGHCQTP-GEYWLGNDRI 323

  Fly   612 HHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASD------------- 663
            ..|:....:.|.|:|:|...:...|:|::|.:...|..|.|.:..|||.|.:             
Zfish   324 SQLSKMGATELLVEMEDWSGSKVYAQYEQFSMQGEASNYILGVGRYSGTAGNTFLEGATELFGEN 388

  Fly   664 -ALNYQQGMQFSAIDDDRD-----ISQTHCAANYEGGWWFSHCQHANLNGRY------------- 709
             .:....||.||..|.|.|     .....|:....||||::.|...|.||||             
Zfish   389 RTMTIHNGMMFSTYDRDNDKWIPGDPSKQCSKEDGGGWWYNRCHSCNPNGRYYWGGAYTKYMAKH 453

  Fly   710 --NLGLTWFDAARNEWIAVKSSRMLVK 734
              :.|:.|.: .:..|.::|:..|.::
Zfish   454 GTDDGIVWMN-WKGSWYSLKTISMKIR 479

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 65/247 (26%)
fgbNP_997939.1 Fib_alpha 87..229 CDD:285864 23/144 (16%)
FReD 232..481 CDD:294064 69/269 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.910

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