DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and CG6788

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_573254.1 Gene:CG6788 / 32773 FlyBaseID:FBgn0030880 Length:358 Species:Drosophila melanogaster


Alignment Length:336 Identity:89/336 - (26%)
Similarity:153/336 - (45%) Gaps:62/336 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   442 AMAVSVSVLQEEREGMRKLSANVDQ---------LRTNVDRLQSL-VNDEMKNKLTHLNKPHK-- 494
            ::::|.|:..:.:   |....|.|.         .|..:||...: .:||:||::..:::..|  
  Fly    15 SLSISTSLANDPQ---RSFDQNADNPCSAHRIWVWRPILDRFAKVNSSDELKNQVNAMSETIKDL 76

  Fly   495 --RPHHQN----VQAQMPQDDSPIDSVL---AETLVSELENVETQYEA--------------IIN 536
              |..|:|    :||...:|.|...:||   .:.|.||..|.:.:.::              :.|
  Fly    77 QTRIGHKNELLLLQAGQIKDQSARLNVLIKNMKVLRSECLNAQAEIKSKDIQIQLSAAKIKQMSN 141

  Fly   537 KLPHDCSEVHT----QTDGLHLI----APAGQRHPLMTHCTADGWTTVQRRFDGSADFNRSWADY 593
            :|...||...|    ...|::.:    .||.:     ..|:::||.|:|:|:||:.:|:|.|.||
  Fly   142 ELVTQCSRQDTCPIDGKGGIYKLKIRELPAFE-----APCSSNGWLTIQKRYDGAENFDRGWKDY 201

  Fly   594 AQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRL-HIAEY 657
            ..|||...|||:||.|::|.:|......|.:::..|......|.|..|.:....:.|.| .:..|
  Fly   202 KDGFGRVRGEFFIGLEKVHLMTRQRRHELYIKLGKIDGTTSHAHYDNFELGGEIESYELKSLGRY 266

  Fly   658 SGNASDALNYQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRY----------NLG 712
            :|.|.|:|...:..:|:..|.|.|..:.:|||:..||||:..|..:.|||::          ..|
  Fly   267 NGTAGDSLRPHERQKFTTNDKDNDAYRFNCAADEYGGWWYYDCAKSMLNGKFYKEGRSRNGKTNG 331

  Fly   713 LTWFDAARNEW 723
            :.|.....|:|
  Fly   332 ILWGSWHNNDW 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 62/205 (30%)
CG6788NP_573254.1 FReD 160..356 CDD:238040 58/188 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - otm14151
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.910

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