DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and Angpt4

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_001099996.1 Gene:Angpt4 / 296269 RGDID:1307539 Length:508 Species:Rattus norvegicus


Alignment Length:589 Identity:138/589 - (23%)
Similarity:233/589 - (39%) Gaps:125/589 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   180 LAALRSSQ------SGNKERLTVEWLQQTISEIRKQLVDLQRTASNVAQDVQQRSSTFEDLATIR 238
            ||.:.::|      ||.::...|:..|.:.:.:..: .|:.:.|....:.:...:|...||...|
  Rat    15 LATMAAAQHRGPEASGRRQIHRVQHGQCSYTFVLPE-PDICQLAPVAPEGLGGSNSLQRDLPAAR 78

  Fly   239 SDYQQLKLDLAAQRERQQQTEVYVQELREEMLQQEQDFQ----HALVKLQQRTRKDGSSASVEEE 299
            ......:...|.:.:|..|.|..::...:.:|:.||..|    ..|.:.||.|.::.::..:...
  Rat    79 HHLTDWRAQRAQRAQRVSQLEKILENNTQWLLKLEQSIQMNLRSDLAQAQQHTIQNQTTTMLALG 143

  Fly   300 SGSQEANQEQTGLETTADHK-RRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHHIDERVRSIEVEQ 363
            :........||...|..:.: ..|......|:.:..|:...|.||:          .::|.|:: 
  Rat   144 ANLMNQTMAQTHKLTAVEAQVLNHTSRVKTQMLESSLSTNKLERQM----------LMQSRELQ- 197

  Fly   364 HRIANANFNLSSQIASLDKLHTSMLELLEDV-EGLQTKMDKSIPELRHEISKLEFANAQITSEQS 427
             |:...|..|.:::.:|:..|.:.|..|:|. |.||:.       |.|:...|            
  Rat   198 -RLQGRNRALETRLQALEAQHQAQLNSLQDKREQLQSL-------LGHQTGAL------------ 242

  Fly   428 LIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKP 492
                  .|...||:|::.:.|.||::::          ||...|.||..:|              
  Rat   243 ------ANLKHSLRALSSNSSSLQQQQQ----------QLMELVQRLVRIV-------------- 277

  Fly   493 HKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVH---TQTDGLHL 554
                         .||..|:.....:.|.                  .||:|:.   ..|.|::.
  Rat   278 -------------AQDQHPVSLKTPKPLF------------------RDCAEIKRSGANTSGVYT 311

  Fly   555 IAPAGQRHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLT 615
            |..|....||...|..:    |||.:|||.|||.:|.|:|.:|.:|||....|.|:|||.:|.||
  Rat   312 IHGANMTKPLKVFCDMETDGGGWTLIQRREDGSLNFQRTWEEYKEGFGNVAREHWLGNEAVHSLT 376

  Fly   616 LDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHI--AEYSGNASDALNYQQGMQFSAIDD 678
            ......|:|::.|...:....:|:.|.:.|....|.|.:  :..|....::| ..||.:||..|.
  Rat   377 SRTAYLLRVELHDWEGHQTSIQYENFQLGSERQRYSLSVNDSSISARLKNSL-APQGTKFSTKDM 440

  Fly   679 DRDISQTHCAANYEGGWWFSHCQHANLNGRY-----NL----GLTWFDAARNEWIAVKSSRMLVK 734
            |.|.....||....|||||..|..:||||.|     :|    |:.| ...|....::..:||:::
  Rat   441 DNDNCMCKCAQMLSGGWWFDACGLSNLNGIYYPVHQHLHKINGIRW-HYFRGPSYSLHGTRMMLR 504

  Fly   735 RLPA 738
            .:.|
  Rat   505 PMGA 508

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 19/103 (18%)
FBG 538..736 CDD:214548 70/215 (33%)
Angpt4NP_001099996.1 FReD 291..506 CDD:238040 71/234 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

Return to query results.
Submit another query.