DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and Fgg

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_006232587.1 Gene:Fgg / 24367 RGDID:2613 Length:445 Species:Rattus norvegicus


Alignment Length:417 Identity:101/417 - (24%)
Similarity:168/417 - (40%) Gaps:99/417 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   398 QTKMDKSIPELRHEISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEEREGM----- 457
            ||.:|..:..|.:.:.:.|              ...|.|...::|:.|..:..|..:.||     
  Rat    59 QTDVDTDLQTLENILQRAE--------------NRTTEAKELIKAIQVYYNPDQPPKPGMIEGAT 109

  Fly   458 RKLSANVDQL----------RTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPI 512
            :|....|:::          .:::..||.:.... |.|:|:|.   ::......|.|.|..||  
  Rat   110 QKSKKMVEEILKYEALLLTHESSIRYLQDIYTSN-KQKITNLK---QKVAQLEAQCQEPCKDS-- 168

  Fly   513 DSVLAETLVSELENVETQYEAIINKLPHDCSEV---HTQTDGLHLIAPAGQRHPLMTHCTAD--- 571
                               ..|.:....||.::   ..:..||:.|.|.......:.:|..|   
  Rat   169 -------------------VRIHDTTGKDCQDIANKGAKESGLYFIRPLKATQQFLVYCEIDGSG 214

  Fly   572 -GWTTVQRRFDGSADFNRSWADYAQGFG--APGG--EFWIGNEQLHHLTLDNC--SRLQVQMQDI 629
             |||.:|:|.|||.||.::|..|.:|||  :|.|  |||:|||::|.:::.:.  ..|::|::|.
  Rat   215 NGWTVLQKRLDGSVDFKKNWIQYKEGFGHLSPTGTTEFWLGNEKIHLISMQSTIPYALRIQLKDW 279

  Fly   630 YDNVWVAEYKRFYISSRADGYRLHIAEY-SGNASDALN--------------YQQGMQFSAIDDD 679
            ......|:|..|.:...:|.|||..|.: .|:|.||.:              ...||.||..|:|
  Rat   280 SGRTSTADYAMFRVGPESDKYRLTYAYFIGGDAGDAFDGYDFGDDPSDKFFTSHNGMHFSTWDND 344

  Fly   680 RDISQTHCAANYEGGWWFSHCQHANLNGRYNLGLTWFDAA--------------RNEWIAVKSSR 730
            .|..:.:||.....|||.:.|...:|||.|..|.|:..::              :..|.::|.:.
  Rat   345 NDKFEGNCAEQDGSGWWMNKCHAGHLNGVYYQGGTYSKSSTPNGYDNGIIWATWKTRWYSMKETT 409

  Fly   731 MLV---KRLPAVECQANASASGAFVSV 754
            |.:   .||...:.|.:.......|||
  Rat   410 MKIIPFNRLSIGDGQQHHMGGSKQVSV 436

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175 17/101 (17%)
FBG 538..736 CDD:214548 69/242 (29%)
FggXP_006232587.1 Fib_alpha 30..172 CDD:462570 25/151 (17%)
Fibrinogen_C 175..414 CDD:395095 69/238 (29%)

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