DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and Fgb

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_064456.2 Gene:Fgb / 24366 RGDID:2604 Length:479 Species:Rattus norvegicus


Alignment Length:429 Identity:99/429 - (23%)
Similarity:166/429 - (38%) Gaps:120/429 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   363 QHRIANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLEFANAQITSEQS 427
            ::.||..|.|::| ::....:....|.||:|   :..|....:.:           |..:.:|.|
  Rat   112 KNSIAELNSNINS-VSETSSVTFQYLTLLKD---MWKKKQAQVKD-----------NENVINEYS 161

  Fly   428 LIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKP 492
            .|.|:        |.:.:..:|.......:|.|.:.::.||:.:.:|:|                
  Rat   162 SILED--------QKLYIDETVNDNIPLNLRVLRSILEDLRSKIQKLES---------------- 202

  Fly   493 HKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEV---HTQTDGLHL 554
                   ::.||.....:|.             .|......:..|   :|.|:   ..:|..::|
  Rat   203 -------DISAQTEYCHTPC-------------TVNCNIPVVSGK---ECEEIIRKGGETSEMYL 244

  Fly   555 IAPAGQRHPLMTHCTA----DGWTTVQRRFDGSADFNRSWADYAQGF-------------GAPGG 602
            |.|.....|...:|..    .|||.:|.|.|||.||.|.|..|.:||             |.| |
  Rat   245 IQPDTSSKPYRVYCDMKTENGGWTVIQNRQDGSVDFGRKWDPYKKGFGNIATNEDTKKYCGLP-G 308

  Fly   603 EFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDAL-- 665
            |:|:||:::..||....:.|.::|:|...:...|.|..|.:.:.|:.|::.:.:|.|.|.:||  
  Rat   309 EYWLGNDKISQLTRIGPTELLIEMEDWKGDKVKAHYGGFTVQTEANKYQVSVNKYKGTAGNALME 373

  Fly   666 ------------NYQQGMQFSAIDDDRD-----ISQTHCAANYEGGWWFSHCQHANLNGRY---- 709
                        ....||.||..|.|.|     ..:..|:....||||::.|..||.||||    
  Rat   374 GASQLVGENRTMTIHNGMFFSTYDRDNDGWVTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGG 438

  Fly   710 -----------NLGLTWFDAARNEWIAVKSSRMLVKRLP 737
                       :.|:.|.: .:..|.:::  ||.:|..|
  Rat   439 LYSWDMSKHGTDDGVVWMN-WKGSWYSMR--RMSMKIRP 474

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175 23/121 (19%)
FBG 538..736 CDD:214548 70/251 (28%)
FgbNP_064456.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 20..82
Beta-chain polymerization, binding distal domain of another fibrin. /evidence=ECO:0000250 33..35
Fib_alpha 79..222 CDD:462570 27/168 (16%)
Fibrinogen_C 225..474 CDD:395095 71/255 (28%)
Blue background indicates that the domain is not in the aligned region.

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