DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and Angpt1

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_033770.2 Gene:Angpt1 / 11600 MGIID:108448 Length:498 Species:Mus musculus


Alignment Length:503 Identity:125/503 - (24%)
Similarity:214/503 - (42%) Gaps:118/503 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   297 EEESGSQEANQEQ---TGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHHIDERVRS 358
            |.:...:|:..||   ..|:..|.|....  |.|:::..|:....|..:.:..|. ::|.|.::|
Mouse    49 EHDGNCRESATEQYNTNALQRDAPHVEPD--FSSQKLQHLEHVMENYTQWLQKLE-NYIVENMKS 110

  Fly   359 --IEVEQHRIAN-------ANFNLSSQIA----SLDKLHTSML--------ELLEDVEGLQT-KM 401
              .:::|:.:.|       ...:|.||.|    .|..:.|.:|        :|||:  .|.| |:
Mouse   111 EMAQIQQNAVQNHTATMLEIGTSLLSQTAEQTRKLTDVETQVLNQTSRLEIQLLEN--SLSTYKL 173

  Fly   402 DKSIPELRHEISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQ 466
            :|.:.:..:||.|:...|:.:  |..::..||.:..        .:..|:||:|.::.|      
Mouse   174 EKQLLQQTNEILKIHEKNSLL--EHKILEMEGKHKE--------ELDTLKEEKENLQGL------ 222

  Fly   467 LRTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQY 531
                |.| |:.:..|::.:|:       |..:.|             |:|.:   .:||.::|.:
Mouse   223 ----VSR-QTFIIQELEKQLS-------RATNNN-------------SILQK---QQLELMDTVH 259

  Fly   532 EAII----------------NKLPHDCSEVHT---QTDGLHLIAPAGQRHPLMTHCTAD----GW 573
            ..|.                .|...||::|:.   ...|::.|.......|....|..|    ||
Mouse   260 NLISLCTKEGVLLKGGKREEEKPFRDCADVYQAGFNKSGIYTIYFNNMPEPKKVFCNMDVNGGGW 324

  Fly   574 TTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEY 638
            |.:|.|.|||.||.|.|.:|..|||.|.||:|:|||.:..:|......|::::.|...|...::|
Mouse   325 TVIQHREDGSLDFQRGWKEYKMGFGNPSGEYWLGNEFIFAITSQRQYMLRIELMDWEGNRAYSQY 389

  Fly   639 KRFYISSRADGYRLHIAEYSGNASDALN-YQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQH 702
            .||:|.:....|||::..::|.|....: ...|..||..|.|.|.....||....|||||..|..
Mouse   390 DRFHIGNEKQNYRLYLKGHTGTAGKQSSLILHGADFSTKDADNDNCMCKCALMLTGGWWFDACGP 454

  Fly   703 ANLNGRYNLGLTWFDAARN-------EW-------IAVKSSRMLVKRL 736
            :||||.:      :.|.:|       :|       .:::|:.|:::.|
Mouse   455 SNLNGMF------YTAGQNHGKLNGIKWHYFKGPSYSLRSTTMMIRPL 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 1/2 (50%)
FBG 538..736 CDD:214548 67/219 (31%)
Angpt1NP_033770.2 RILP-like <133..238 CDD:304877 30/127 (24%)
FReD 281..496 CDD:238040 68/220 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.000

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