DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and angptl3

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_571893.2 Gene:angptl3 / 114421 ZFINID:ZDB-GENE-010817-3 Length:466 Species:Danio rerio


Alignment Length:727 Identity:166/727 - (22%)
Similarity:258/727 - (35%) Gaps:280/727 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    35 ILLAVVLLQISVAFVSGAASGGVVLSDVNNMLRDAKVVTSEKPVVHSKQETEAPESSVELLRFVD 99
            :|:.::||.:|::..|.|.              ::|...:|.|::.:...|||..      ||. 
Zfish     1 MLMLILLLWLSLSTTSAAP--------------NSKKSPTEAPILITAPPTEARS------RFA- 44

  Fly   100 DDEDSEDISSIERQDGRTMESKKMADQVRLLTKQLNALMLRRREDYEMLEHNLRKSLRLTTNANS 164
                                   |.|.||||.   |.|:            .|.:|||       
Zfish    45 -----------------------MLDDVRLLA---NGLL------------QLGQSLR------- 64

  Fly   165 VDADMRSELNQLREELAALRSSQSGNKERLTVEWLQQTISEIRKQLVDLQRTASNVAQDVQQRSS 229
                                            |::.:|.|:|               .|:.|:.:
Zfish    65 --------------------------------EFVHKTKSQI---------------NDIFQKLN 82

  Fly   230 TFEDLATIRSDYQQLKLDLAAQRERQQQTEVYVQELREEMLQQEQDFQHALVKLQQRTRKDGSSA 294
            .|:     ||.|               |..|...|::||    |:..:...:.|           
Zfish    83 IFD-----RSFY---------------QLSVVTSEIKEE----EEKLKETTIFL----------- 112

  Fly   295 SVEEESGSQEANQEQTGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHHIDERVRSI 359
                     :||.|:.                           |||..::|....:.:.||    
Zfish   113 ---------KANNEEI---------------------------RNLSLEINSKINNILQER---- 137

  Fly   360 EVEQHRIANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIP-ELRHEISKLEFANAQIT 423
                                 .:|||.:..|.|.::||...|   :| |...||:.|:  :...|
Zfish   138 ---------------------SQLHTKVGGLEEKLKGLSQSM---MPLEQLQEITALK--DVIET 176

  Fly   424 SEQSLIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTH 488
            .|:::     |:..||::.        |.::...:|:.....:.:.|.|..|..:...|     .
Zfish   177 QERTI-----TDLLRSVKE--------QHDQLNYQKIKIKSLEDKVNYDTFQDTIEKPM-----D 223

  Fly   489 LNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVHT---QTD 550
            ||               |:...|.         ..|....|.....||..|.|||||.|   :|.
Zfish   224 LN---------------PETPDPF---------RYLTTNSTNGTKDINDFPADCSEVFTRGQKTS 264

  Fly   551 GLHLIAPAGQRHPLMTHC--TADGWTTV-QRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLH 612
            |::.|.| .|..|...:|  |.||..|| |||.|||.||::||..|..|||....|||:|..::|
Zfish   265 GIYPIKP-NQSEPFYVYCEITPDGAATVIQRREDGSVDFDQSWEKYEHGFGKLEKEFWLGLAKIH 328

  Fly   613 HLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDALNYQQGMQFSAID 677
            .:.......|.::::|..:.....|| .|.:...|..|.||:|..||:.|||::...||:||..|
Zfish   329 SIAQQGEYILHIELEDWKEEKRFIEY-TFTLEGPASDYALHLAPLSGDLSDAMSNHTGMKFSTKD 392

  Fly   678 DDRD-ISQTHCAANYEGGWWFSHCQHANLNGRY-----------NLGLTWFDAARNEWIAVKSSR 730
            .|.| ..:::||.||.|||||..|...||||||           ..|:.|..:..:.: .:||::
Zfish   393 RDNDNHDESNCARNYTGGWWFDACGDTNLNGRYAWMRSKARHQRRKGIYWRPSKGSSY-TLKSTK 456

  Fly   731 MLVKRLPAVECQ 742
            :.::  |:.:.|
Zfish   457 ITIR--PSTQFQ 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 16/99 (16%)
FBG 538..736 CDD:214548 80/215 (37%)
angptl3NP_571893.2 SMC_N <111..>209 CDD:330553 30/187 (16%)
FReD 248..461 CDD:238040 80/217 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

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