DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and angpt1

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_571888.1 Gene:angpt1 / 114407 ZFINID:ZDB-GENE-010817-1 Length:513 Species:Danio rerio


Alignment Length:512 Identity:117/512 - (22%)
Similarity:221/512 - (43%) Gaps:112/512 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   227 RSSTFEDLATIRSDYQQLKLDLAAQRERQQQTEVYVQELREEMLQQEQDF-----QHALVKLQQR 286
            :|.|..:...::.|..|.:.||:.|:.:|.:   :|.|...:.||:.:::     :..:|:|||.
Zfish    68 KSGTAYNANALQRDAPQPEADLSNQKIQQLE---HVMENYTQWLQKIENYIKDNMKTEMVQLQQS 129

  Fly   287 TRKDGSSASVEEESGSQEANQEQTGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFHH 351
            ...:.::|.:  |.|:...:|                  .:||..:|...:..:..|.:.|....
Zfish   130 AVHNHTAAML--EMGTSLLSQ------------------TAEQTRKLTDVETQVLNQTSRLEIQL 174

  Fly   352 IDERVRSIEVEQHRIANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLE 416
            ::..:.:.::|:        .|..||..::|:|.....|.|.::.|:.:..:.:..||.|.|.|:
Zfish   175 LENSLSTNKLEK--------QLMIQINEINKIHDKNGFLEEKMQELEDRHRQELESLRTEKSDLQ 231

  Fly   417 FANAQITSEQSLIREEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDE 481
               |.::.:.|:|||.....:|:    ..:.:.||.:::.:             ::.::||:   
Zfish   232 ---ALVSRQSSVIRELENQLSRA----TGNSTALQRQQQDL-------------MESMRSLL--- 273

  Fly   482 MKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVH 546
                                            |:.|:...:.:|...|: :|...:...||::::
Zfish   274 --------------------------------SLCAKDAATAVEPNSTK-QADEERKFRDCADLY 305

  Fly   547 T---QTDGLHLIAPAGQRHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEF 604
            .   |.:|::.|..:.| .....:|..:    |||.:|:|.||:.||.::|.:|..|||:..||.
Zfish   306 QAGFQKNGVYTINISPQ-ETKKVYCVMESAGGGWTVIQKREDGTVDFQKTWKEYKMGFGSVSGEH 369

  Fly   605 WIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDALNYQ- 668
            |:|||.:|.||......|:|::.|...:...::|..|:|.|....|||.:..:||.|....:.. 
Zfish   370 WLGNEFVHVLTNQRQHGLRVELSDWDGHQAFSQYDSFHIDSEKQKYRLFLKTHSGTAGRQSSLAV 434

  Fly   669 QGMQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLN----------GRYNLGLTW 715
            .|..||..|.|.|.....||....||||:..|..:|||          |::| |:.|
Zfish   435 HGADFSTKDVDNDNCTCKCALMLSGGWWYDACGPSNLNGVYYRQGQHVGKFN-GIKW 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 17/77 (22%)
FBG 538..736 CDD:214548 63/196 (32%)
angpt1NP_571888.1 RILP-like <206..272 CDD:304877 15/85 (18%)
FReD 298..508 CDD:238040 63/195 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.000

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