DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and Fgb

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_862897.1 Gene:Fgb / 110135 MGIID:99501 Length:481 Species:Mus musculus


Alignment Length:426 Identity:101/426 - (23%)
Similarity:163/426 - (38%) Gaps:120/426 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 IANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLEFANAQITSEQSLIR 430
            ||..|.|:.| ::....:....|.||:|   :..|....:.|           |..:.:|.|.|.
Mouse   117 IAELNNNIQS-VSDTSSVTFQYLTLLKD---MWKKKQAQVKE-----------NENVINEYSSIL 166

  Fly   431 EEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKPHKR 495
            |:        |.:.:..:|.......:|.|.:.::.||:.:.:|:|                   
Mouse   167 ED--------QRLYIDETVNDNIPLNLRVLRSILEDLRSKIQKLES------------------- 204

  Fly   496 PHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEV---HTQTDGLHLIAP 557
                ::.|||....:|.             .|......:..|   :|.|:   ..:|..::||.|
Mouse   205 ----DISAQMEYCRTPC-------------TVSCNIPVVSGK---ECEEIIRKGGETSEMYLIQP 249

  Fly   558 AGQRHPLMTHCTA----DGWTTVQRRFDGSADFNRSWADYAQGF-------------GAPGGEFW 605
            .....|...:|..    .|||.:|.|.|||.||.|.|..|.:||             |.| ||:|
Mouse   250 DTSIKPYRVYCDMKTENGGWTVIQNRQDGSVDFGRKWDPYKKGFGNIATNEDAKKYCGLP-GEYW 313

  Fly   606 IGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDAL----- 665
            :||:::..||....:.|.::|:|...:...|.|..|.:.:.|..|::.:.:|.|.|.:||     
Mouse   314 LGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEASKYQVSVNKYKGTAGNALMDGAS 378

  Fly   666 ---------NYQQGMQFSAIDDDRD-----ISQTHCAANYEGGWWFSHCQHANLNGRY------- 709
                     ....||.||..|.|.|     ..:..|:....||||::.|..||.||||       
Mouse   379 QLVGENRTMTIHNGMFFSTYDRDNDGWVTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGLYS 443

  Fly   710 --------NLGLTWFDAARNEWIAVKSSRMLVKRLP 737
                    :.|:.|.: .:..|.:::  ||.:|..|
Mouse   444 WDMSKHGTDDGVVWMN-WKGSWYSMR--RMSMKIRP 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 70/251 (28%)
FgbNP_862897.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..81
Beta-chain polymerization, binding distal domain of another fibrin. /evidence=ECO:0000250 35..37
Fib_alpha 82..224 CDD:285864 29/165 (18%)
FReD 227..476 CDD:294064 71/255 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG2579
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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