DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and Fgb

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:NP_862897.1 Gene:Fgb / 110135 MGIID:99501 Length:481 Species:Mus musculus


Alignment Length:426 Identity:101/426 - (23%)
Similarity:163/426 - (38%) Gaps:120/426 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   366 IANANFNLSSQIASLDKLHTSMLELLEDVEGLQTKMDKSIPELRHEISKLEFANAQITSEQSLIR 430
            ||..|.|:.| ::....:....|.||:|   :..|....:.|           |..:.:|.|.|.
Mouse   117 IAELNNNIQS-VSDTSSVTFQYLTLLKD---MWKKKQAQVKE-----------NENVINEYSSIL 166

  Fly   431 EEGTNAARSLQAMAVSVSVLQEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKPHKR 495
            |:        |.:.:..:|.......:|.|.:.::.||:.:.:|:|                   
Mouse   167 ED--------QRLYIDETVNDNIPLNLRVLRSILEDLRSKIQKLES------------------- 204

  Fly   496 PHHQNVQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEV---HTQTDGLHLIAP 557
                ::.|||....:|.             .|......:..|   :|.|:   ..:|..::||.|
Mouse   205 ----DISAQMEYCRTPC-------------TVSCNIPVVSGK---ECEEIIRKGGETSEMYLIQP 249

  Fly   558 AGQRHPLMTHCTA----DGWTTVQRRFDGSADFNRSWADYAQGF-------------GAPGGEFW 605
            .....|...:|..    .|||.:|.|.|||.||.|.|..|.:||             |.| ||:|
Mouse   250 DTSIKPYRVYCDMKTENGGWTVIQNRQDGSVDFGRKWDPYKKGFGNIATNEDAKKYCGLP-GEYW 313

  Fly   606 IGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDAL----- 665
            :||:::..||....:.|.::|:|...:...|.|..|.:.:.|..|::.:.:|.|.|.:||     
Mouse   314 LGNDKISQLTRMGPTELLIEMEDWKGDKVKAHYGGFTVQNEASKYQVSVNKYKGTAGNALMDGAS 378

  Fly   666 ---------NYQQGMQFSAIDDDRD-----ISQTHCAANYEGGWWFSHCQHANLNGRY------- 709
                     ....||.||..|.|.|     ..:..|:....||||::.|..||.||||       
Mouse   379 QLVGENRTMTIHNGMFFSTYDRDNDGWVTTDPRKQCSKEDGGGWWYNRCHAANPNGRYYWGGLYS 443

  Fly   710 --------NLGLTWFDAARNEWIAVKSSRMLVKRLP 737
                    :.|:.|.: .:..|.:::  ||.:|..|
Mouse   444 WDMSKHGTDDGVVWMN-WKGSWYSMR--RMSMKIRP 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175 24/118 (20%)
FBG 538..736 CDD:214548 70/251 (28%)
FgbNP_862897.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 22..81
Beta-chain polymerization, binding distal domain of another fibrin. /evidence=ECO:0000250 35..37
Fib_alpha 81..224 CDD:462570 29/165 (18%)
Fibrinogen_C 227..476 CDD:395095 71/255 (28%)
Blue background indicates that the domain is not in the aligned region.

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