DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and LOC101733339

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_017945122.1 Gene:LOC101733339 / 101733339 XenbaseID:XB-GENE-29086887 Length:287 Species:Xenopus tropicalis


Alignment Length:188 Identity:65/188 - (34%)
Similarity:94/188 - (50%) Gaps:17/188 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   563 PLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQ 623
            ||...|..:    ||...|||.|||.||.|.|..|.:|||....|||:||:.||.||.....:|:
 Frog   102 PLSVLCDMETDGGGWIVFQRRADGSVDFYRDWNSYKRGFGRKESEFWLGNDNLHLLTATGNFQLR 166

  Fly   624 VQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYS-GNASDALNYQQGMQFSAIDDDRDISQTHC 687
            |.:.|..:....|.|..|.|:..|..|.|.:..:: |:|.|:|:..:...||..|.|   ::..|
 Frog   167 VDLTDFSEQRTYAAYSNFRIAGEAQNYTLSLGGFTGGDAGDSLSGHKNFAFSTKDRD---NKGSC 228

  Fly   688 AANYEGGWWFSHCQHANLNG--------RYNLGLTWFDAARNEWIAVKSSRMLVKRLP 737
            |..::||||:..|.::||||        .|..|:.| .|.:..:.:.|.|.|.::..|
 Frog   229 AQRFKGGWWYEACHYSNLNGLYLRGDHTSYANGVNW-SAGKGYYYSYKVSEMKIRPQP 285

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175
FBG 538..736 CDD:214548 64/185 (35%)
LOC101733339XP_017945122.1 Collagen 41..76 CDD:460189
FReD 77..283 CDD:238040 64/184 (35%)
Blue background indicates that the domain is not in the aligned region.

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