DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and LOC100496532

DIOPT Version :10

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_031746600.1 Gene:LOC100496532 / 100496532 XenbaseID:XB-GENE-29083207 Length:349 Species:Xenopus tropicalis


Alignment Length:197 Identity:70/197 - (35%)
Similarity:98/197 - (49%) Gaps:20/197 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   537 KLPHDCSEV----HTQTDGLHLIAPAGQRHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADY 593
            |...:|.|:    .|.| |.:.:.|.|.: |:...|..|    ||...|||.|||.||.|.|..|
 Frog   134 KASKNCMELLNNGATLT-GWYTVYPDGNK-PINVLCDMDTDGGGWIVFQRRVDGSVDFYRDWKSY 196

  Fly   594 AQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYS 658
            .||||:..||||:|||.:|.||.....:|:..::|..:|...|.|.:|.:...:..|.|...|::
 Frog   197 KQGFGSQLGEFWLGNENIHLLTSSGNFQLRFDLEDFDNNRTYATYSQFRLEPESQKYTLRFGEFT 261

  Fly   659 GN-ASDALNYQQGMQFSAIDDDRD-ISQTHCAANYEGGWWFSHCQHANLNGRY--------NLGL 713
            |. |.|:|...:...||..|.|.| .:.:.||..|.|.||:|.|.:::|||.|        ..|:
 Frog   262 GGPAGDSLGPHKNRAFSTKDADNDTANDSSCAVLYVGAWWYSSCHNSSLNGEYLRGKHSKRGSGV 326

  Fly   714 TW 715
            .|
 Frog   327 LW 328

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK03918 134..>485 CDD:235175
FBG 538..736 CDD:214548 69/196 (35%)
LOC100496532XP_031746600.1 Collagen 50..89 CDD:460189
FReD 134..347 CDD:238040 70/197 (36%)
Blue background indicates that the domain is not in the aligned region.

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