DRSC/TRiP Functional Genomics Resources

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Protein Alignment sca and fgl2

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_002933134.2 Gene:fgl2 / 100494596 XenbaseID:XB-GENE-482375 Length:429 Species:Xenopus tropicalis


Alignment Length:372 Identity:109/372 - (29%)
Similarity:164/372 - (44%) Gaps:62/372 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   404 SIPELRHEISK-LEFANAQITSEQSLIREEGTNA-ARSLQAMAVSVSVLQEEREGMRK-LSANVD 465
            ::|.:..::.| .:.....|...|||  :|..|| .:|.|...:......|:..|.:. .|.|.|
 Frog    55 NLPSMTIQLPKQFQLLEKTIKEVQSL--KEIVNALKKSCQDCKLQADDTPEKDNGQQNPESTNGD 117

  Fly   466 QLRTNVDRLQSLVND---EMKNKLTHLNKPHKRPHHQNVQAQMPQDDSPIDSVLAETLVS----- 522
            | ..|:..|||.|..   .:||....:|         ::|.|:.: .|||:....|..|.     
 Frog   118 Q-DNNIHELQSKVKKMSISLKNARNQIN---------SLQEQLGK-MSPINMNTIEQYVDTKMIN 171

  Fly   523 ---ELENVETQYEA---------IINKLPHDCSE---VHTQTDGLHLIAPAGQRHPLMTHCTAD- 571
               .|.|::.:..:         .|..|..|||:   :..:.||.:.:.|..:......:|..: 
 Frog   172 LSFALNNLDNKCSSNCPVLEANPSIQLLYKDCSDYYKIGKKVDGRYRVTPDEKNKTFEVYCDMES 236

  Fly   572 ---GWTTVQRRFDGSADFNRSWADYAQGFGAPGGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNV 633
               |||.||.|.|||..|||:|.:|..|||...||||:||::||.||......|:::::|...|.
 Frog   237 MGGGWTVVQIRKDGSTSFNRTWNEYKNGFGNLTGEFWLGNDKLHLLTKSTDMILRIELEDFKGNR 301

  Fly   634 WVAEYKRFYISSRADGYRLHIAEYSGNASDALNYQQGMQ-----FSAIDDDRD-ISQTHCAANYE 692
            ..|:|.:||:::....|||.|..|||.|.|||::.:...     |:..|.|.| ....:|.:.|.
 Frog   302 EYAKYDQFYVANEYLKYRLTIGGYSGTAGDALHFSKQYNHDQKFFTTPDKDNDRYPSGNCGSYYS 366

  Fly   693 GGWWFSHCQHANLNGRY--------NLGLTWFDAARNEWIAVKSSRM 731
            .||||..|..|||||:|        ..|:.|     ..|..|....:
 Frog   367 SGWWFDACMSANLNGKYYKNDYKGVRNGIFW-----GTWTGVSDEHL 408

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343
FBG 538..736 CDD:214548 74/215 (34%)
fgl2XP_002933134.2 Smc <53..164 CDD:224117 31/121 (26%)
FReD 199..425 CDD:238040 74/215 (34%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 164 1.000 Inparanoid score I4078
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.960

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