DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sca and fga

DIOPT Version :9

Sequence 1:NP_476710.2 Gene:sca / 36411 FlyBaseID:FBgn0003326 Length:799 Species:Drosophila melanogaster
Sequence 2:XP_002933535.3 Gene:fga / 100038060 XenbaseID:XB-GENE-478771 Length:761 Species:Xenopus tropicalis


Alignment Length:800 Identity:184/800 - (23%)
Similarity:301/800 - (37%) Gaps:240/800 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   104 SEDISSIERQDG-----RTMESKKMADQVRLLTKQLNALMLRRREDYEMLEHNLRKSLRLTTNAN 163
            ||:...||.|.|     |.||:|..:|     .||.....:...||:   ........||....:
 Frog    20 SEEEGGIEAQGGSIRGPRIMEAKAESD-----CKQDKNWPICSDEDW---GPKCPSGCRLQGLVD 76

  Fly   164 SVDADMRSELNQLREELAALRSSQSGNKERLTVEW-LQQTISEIRKQLVDLQRTASNVAQDVQQR 227
            ..|.|....:..::::|      :.|.....:::. .:||...::..||..|::.....|     
 Frog    77 KTDKDFAKRVETIKQKL------KDGESSHKSIDLKTKQTYQFLKDNLVQAQQSDGKYNQ----- 130

  Fly   228 SSTFEDLATIRSDYQQLKLDLAAQRERQQQTEVYVQELREEMLQQEQDFQHALVKLQQRTRKDGS 292
              ..|||   |...:.|||.::.|.||.:..:..:::...||.:.|.|     :.::.|..| ||
 Frog   131 --VSEDL---RKKIEYLKLKVSNQVERIKALQKNIRDQVVEMKRLEVD-----IDIKIRACK-GS 184

  Fly   293 SASVEEESGSQEANQEQTGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRF-------- 349
            .|.                   ..|:|..|..:.:.|...||....:|..|:|.:|.        
 Frog   185 CAK-------------------NTDYKVDHDSYNNIQKLLLQAETTDLNSQMNAIRVLKMRPIKD 230

  Fly   350 HHIDERVRSIEVEQHRIANANFNLSSQIASLDKLHTSMLELLED-VEGLQTKMDKSIPELRHEIS 413
            ..:|.|.|::.:.:.:  .|.|.:...|    ..:..:||..:| |:|  :.|..|.........
 Frog   231 SPVDSRYRTLALGKDQ--EAEFPIFKDI----NQYAFVLEGTKDEVKG--SSMGTSSVVFPSGSG 287

  Fly   414 K-LEFANAQI----TSEQS-----------LIREEGTNAARSLQAMAVSVSVLQEER-------- 454
            | :.|..::|    .|.||           :|.|...:..::::...||.....:|.        
 Frog   288 KDVVFQGSKIYGDDKSTQSGTVTGGDQSTKVITERTVSCTKTVKRRVVSTPEGPKEEITETYSGG 352

  Fly   455 ---EGMRKLSAN------VDQLRT----------NVDRL-----------------QSLVNDEMK 483
               |.:.|||.:      .|..|.          ::.::                 |:..:....
 Frog   353 PECEKLGKLSTDDTFQGGSDGTRVIHISGGSSLGDISKIPSFEEFLSSSGKKTQTSQTSSSSSSS 417

  Fly   484 NKLTHLNKPHKRPHHQNVQAQMPQD----------DSPI--------DSVLAETLVSELENVE-- 528
            :|:||           :|...:.:|          |||.        .|.:.:|:||...:..  
 Frog   418 SKVTH-----------DVFTDLGEDEFDDFSHTGLDSPSFTPLQKEGSSTITKTVVSSSSSSRGS 471

  Fly   529 ----TQYEAIINK----------LPHDCSEV-------------------HTQTD---------- 550
                ||::....|          :.||.||.                   :|..|          
 Frog   472 SKDGTQFDIKSMKSGPVFTDFGPIQHDNSEEDRPDFQARTVRKEMKLVGDYTGKDCDDIRQKHSS 536

  Fly   551 ----GLHLIAPAGQRHPLMTHCTAD----GWTTVQRRFDGSADFNRSWADYAQGFG---APG-GE 603
                |:..|.|.|....|..:|..|    ||..:|:|.|||.:|||:|.||..|||   |.| ||
 Frog   537 GAKSGIFKIRPEGSTKVLSVYCDQDTQLGGWILIQQRQDGSVNFNRTWQDYKNGFGSVDAGGKGE 601

  Fly   604 FWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGYRLHIAEYSGNASDAL--- 665
            .|:|||.:|.||..: :.|:::::|.......||| ...:.|.|:|:.|.:::|.|.|.|||   
 Frog   602 VWLGNENIHLLTQKD-TILRIELEDWSGEKVYAEY-NIQLGSEAEGFTLKVSQYEGTAGDALIEG 664

  Fly   666 NYQQG-------MQFSAIDDDRDISQTHCAANYEGGWWFSHCQHANLNGRYNLGLTWFDAARN-- 721
            :.:.|       |:||..|.|.|..:.:||..|.||||:::||.:||||.|.:| ..:|...|  
 Frog   665 SKEDGEYTSHINMKFSTYDRDSDKWEENCAEMYGGGWWYNNCQASNLNGIYYIG-GQYDPRNNFP 728

  Fly   722 -------EWIAVKSSRMLVK 734
                   .|:..|::...:|
 Frog   729 YEIENGVVWVPFKAADYSLK 748

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
scaNP_476710.2 PRK13923 <200..300 CDD:276343 25/99 (25%)
FBG 538..736 CDD:214548 81/256 (32%)
fgaXP_002933535.3 Fib_alpha 51..191 CDD:400857 33/183 (18%)
Fibrinogen_aC 299..372 CDD:403400 12/72 (17%)
FReD 523..757 CDD:238040 77/228 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR19143
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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