DRSC/TRiP Functional Genomics Resources

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Protein Alignment wuc and lin-52

DIOPT Version :9

Sequence 1:NP_001097291.1 Gene:wuc / 36401 FlyBaseID:FBgn0033770 Length:136 Species:Drosophila melanogaster
Sequence 2:NP_001255033.1 Gene:lin-52 / 176393 WormBaseID:WBGene00003035 Length:161 Species:Caenorhabditis elegans


Alignment Length:127 Identity:27/127 - (21%)
Similarity:52/127 - (40%) Gaps:22/127 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 YTLEEDPIEFELEKMERGSSNGESEEESQRDQKQADSIIDDMVEQND-------QEQEAAGEQDV 76
            |...:|  |..:::|....||.|..:..::.:|..: ..:.|.|:::       ..:||...:.|
 Worm    10 YEFGDD--EMFVQQMIEKKSNAEQAKMLEQQKKMLE-CTETMPEESEPVPMKCLDFEEAFQSESV 71

  Fly    77 ER------------ENDLRKMYELSLLPPAAIAAQIQQMEKEIYELSQWEARELIRSKHLRI 126
            .:            :.|...:..:|..|...||..|:.::..:|.|...|||:..|.|.|.:
 Worm    72 SKGYESPYKNISFLKEDAVTVNTMSHCPADDIAKLIRNIQNSVYTLGIEEARQCRRGKLLNV 133

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
wucNP_001097291.1 LIN52 <57..127 CDD:287062 19/89 (21%)
lin-52NP_001255033.1 LIN52 <86..134 CDD:287062 14/48 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR31489
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.100

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