DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG8785 and skat-1

DIOPT Version :9

Sequence 1:NP_610804.1 Gene:CG8785 / 36391 FlyBaseID:FBgn0033760 Length:474 Species:Drosophila melanogaster
Sequence 2:NP_498989.1 Gene:skat-1 / 176271 WormBaseID:WBGene00010307 Length:460 Species:Caenorhabditis elegans


Alignment Length:420 Identity:107/420 - (25%)
Similarity:194/420 - (46%) Gaps:15/420 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 ALAHLLKSSLGTGILAMPMAFHNAGLAFGMAMTLIVGFLCTHCVHILVKTSHDICRDAKVSALGF 132
            |:..|.||....|..::|.|:...||.....|:.::..|..:..||||:.|..:.:.:..|||.:
 Worm    42 AVLTLSKSMFNAGCFSLPYAWKLGGLWVSFVMSFVIAGLNWYGNHILVRASQHLAKKSDRSALDY 106

  Fly   133 AETAEKVFEYGP-KGMRPYSNFAKQFVDIGLMATYYAAACVYIVFIATSFHDVINYDLKINWDVR 196
            ...|:||.:|.. :.:|..|.....||::.::........|.|:||:.:..:::...|......:
 Worm   107 GHFAKKVCDYSDIRFLRNNSKAVMYFVNVTILFYQLGMCSVAILFISDNLVNLVGDHLGGTRHQQ 171

  Fly   197 IYIALTV--IPCLLIGQIRDLKWLVPFSMMANIFIVVTFAITLYYMFDEPLVYSDKPLIAKAAHI 259
            :.:..||  ...||.....:::.:..|::::::|.|:..|:.:.|...:|..:...|........
 Worm   172 MILMATVSLFFILLTNMFTEMRIVSFFALVSSVFFVIGAAVIMQYTVQQPNQWDKLPAATNFTGT 236

  Fly   260 PLFFATVIFAMEGIGVVMPVENSMRKPQHFLGCPGVLNIAMVTVVSLYAIIGFFGYVRFGDQVRG 324
            .......::|.||..:::|:||.:..|..||...|||:..|:...:....:|||||..|||.:..
 Worm   237 ITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFMTALGFFGYTGFGDSIAP 301

  Fly   325 SITLNLP-EGAWLGDTAKLLMAVAILFTFGLQFYVPNEILWRKISHKFSPEKHNITQILLRSGI- 387
            :||.|:| ||  |..|..:.:.:..|....:..||..::.:.....||.....|:.:.|...|. 
 Worm   302 TITTNVPKEG--LYSTVNVFLMLQSLLGNSIAMYVVYDMFFNGFRRKFGARFPNVPKWLSDKGFR 364

  Fly   388 ---ILLSGGVAAAIPNLEPFISLVGAVFFSLLGIFVPSFVETVYLWPDRLGVCKW-----KLVKN 444
               :|::..:|..||.||..|.|||....:|..:..|.|.|.:..|.|..|:..:     |:..|
 Worm   365 VFWVLVTYLMAVLIPKLEIMIPLVGVTSGALCALIFPPFFEMITFWTDWKGLLTYRQRMTKIFIN 429

  Fly   445 IFLGVFSILALVAGAVASINEIIEMYSDDD 474
            :.:....:.|::||...:|:.||:.:|..|
 Worm   430 LVVMAIGVFAIIAGVYTNIHAIIQSFSQPD 459

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG8785NP_610804.1 SdaC 60..457 CDD:223884 100/401 (25%)
SLC5-6-like_sbd 62..463 CDD:294310 102/407 (25%)
skat-1NP_498989.1 Aa_trans 35..446 CDD:279788 102/405 (25%)
SdaC 40..448 CDD:223884 102/407 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0814
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54358
OrthoDB 1 1.010 - - D284074at33208
OrthoFinder 1 1.000 - - FOG0000138
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR22950
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X121
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.890

Return to query results.
Submit another query.