DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and Smarca1

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001277637.1 Gene:Smarca1 / 93761 MGIID:1935127 Length:1062 Species:Mus musculus


Alignment Length:1053 Identity:737/1053 - (69%)
Similarity:863/1053 - (81%) Gaps:56/1053 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KTDTAAVEATE--------ENSNETTSD-----AATSSSGEKE--AEFDNK-----IEADRSRRF 47
            |.:.||..|||        |...:.||.     ||.:|..|||  .|::.|     ::|||::||
Mouse    35 KEEGAAAAATEGTTATEKGEKKEKITSPFQLKLAAKASKSEKEMDPEYEEKMVNMPLKADRAKRF 99

  Fly    48 DFLLKQTEIFTHFMTNSA-KSPTKP----KGRPKKIKDKDKEK--DVADHRHRKTEQEEDEELLA 105
            :|||||||:|.||:..|| ||||.|    ..|| ::|..||:.  .|.|:|||:||||||||||:
Mouse   100 EFLLKQTELFAHFIQPSAQKSPTSPLNMKLARP-RVKKDDKQSLISVGDYRHRRTEQEEDEELLS 163

  Fly   106 EDSATKEI-FRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGY 169
            |...|..: .||:.||:|:|.|.:||||||||||:|||||||:|||||||||||||||||:||||
Mouse   164 ESRKTSNVCVRFEVSPSYVKGGPLRDYQIRGLNWLISLYENGVNGILADEMGLGKTLQTIALLGY 228

  Fly   170 LKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTS 234
            |||::|..|||:|:||||||.||:||||:|.||||.:|.:||:|.|..||||.:|||||||||||
Mouse   229 LKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPSLRVICFVGDKDVRAAFIRDEMMPGEWDVCVTS 293

  Fly   235 YEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALL 299
            |||.|:||||||||:||||||||||||||||||||||:||||:.||||:||||||||||||||||
Mouse   294 YEMVIKEKSVFKKFHWRYLVIDEAHRIKNEKSKLSEIVREFKSTNRLLLTGTPLQNNLHELWALL 358

  Fly   300 NFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGL 364
            ||||||||||::|||.||:|..||||..|:.|||||||||||||:|.:|||.|.||||:||::||
Mouse   359 NFLLPDVFNSADDFDSWFDTKNCLGDQKLVERLHAVLKPFLLRRIKTDVEKSLPPKKEIKIYLGL 423

  Fly   365 SKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFDGAEPGPPYTTDTHLVYN 429
            |||||:||||:|:|||||:|.:||::||||.|||||||||.||||||||||||||||||.|:|.|
Mouse   424 SKMQREWYTKILMKDIDVLNSSGKMDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDEHIVGN 488

  Fly   430 SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFN 494
            ||||..|||||.:::||||||||||||||:||||||||.||.|.|.|||||||||:|...|..||
Mouse   489 SGKMVALDKLLARIKEQGSRVLIFSQMTRLLDILEDYCMWRGYEYSRLDGQTPHEEREEAIDAFN 553

  Fly   495 MDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITES 559
            ..||:||:|||||||||||||||:|||||:||||||||:|||||||||||||||.||||||||::
Mouse   554 APNSSKFIFMLSTRAGGLGINLASADVVILYDSDWNPQVDLQAMDRAHRIGQKKPVRVFRLITDN 618

  Fly   560 TVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFGANQVFSSKETDITDEDIDV 624
            ||||:||||||:|||||.:|||.|||:|.:||:|.|:|||.:||.||..||:.||:::|||||..
Mouse   619 TVEERIVERAEIKLRLDSIVIQQGRLIDQQSNKLAKEEMLQMIRHGATHVFACKESELTDEDIVT 683

  Fly   625 ILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVYQFEGEDWREKQKLNALGNWIEPPK 689
            ||||||.||||....:..:||||||.|.||..     .|:|:|||||:||||||..: .||||||
Mouse   684 ILERGEKKTAEMNERMQKMGESSLRNFRMDLE-----QSLYKFEGEDYREKQKLGTV-EWIEPPK 742

  Fly   690 RERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKV 754
            |||||||||||||||||||||||.||||||||||.|||||||||||||||::||.|:|||:||||
Mouse   743 RERKANYAVDAYFREALRVSEPKIPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRKTIGYKV 807

  Fly   755 PKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDD 819
            |:|.|:.:.|. .|||||:|||.|||||.:|.:||:.||:||||.||||||||||||||||||||
Mouse   808 PRNPEIPNPAI-AQREEQKKIDGAEPLTPQETEEKDKLLTQGFTNWTKRDFNQFIKANEKYGRDD 871

  Fly   820 IDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRYR 884
            |||||::||||:||||:||:|||||||.||||||:||.||||||.:||||:|||||||.|::||:
Mouse   872 IDNIAREVEGKSPEEVMEYSAVFWERCNELQDIEKIMAQIERGEARIQRRISIKKALDAKIARYK 936

  Fly   885 APFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTA 949
            |||||||:|||.:|||||||.|||||:|||||:|||:||||||||..:|.:||||||||||||||
Mouse   937 APFHQLRIQYGTSKGKNYTEEEDRFLICMLHKMGFDRENVYEELRQCVRNAPQFRFDWFIKSRTA 1001

  Fly   950 LELQRRCNTLITLIERENIELEEKERAEKKKKAPKGSVSAGSGSASSNTPAPAPQPKASQKRKSE 1014
            :|.||||||||:|||:||:|:||:|||||||:|.|             ||       .|||||:|
Mouse  1002 MEFQRRCNTLISLIEKENMEIEERERAEKKKRATK-------------TP-------MSQKRKAE 1046

  Fly  1015 VVATSSNSKKKKK 1027
            ....||..|..||
Mouse  1047 SATESSGRKDVKK 1059

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 22/44 (50%)
SNF2_N 131..411 CDD:278600 221/279 (79%)
DEXDc 148..287 CDD:238005 110/138 (80%)
HELICc 422..553 CDD:238034 102/130 (78%)
HAND 697..796 CDD:286232 73/98 (74%)
SANT 797..838 CDD:197842 35/40 (88%)
SANT 799..838 CDD:238096 33/38 (87%)
SLIDE 853..965 CDD:286233 87/111 (78%)
Smarca1NP_001277637.1 PLN03142 2..1061 CDD:215601 737/1053 (70%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 27..61 7/25 (28%)
DBINO <73..114 CDD:290603 20/40 (50%)
DEXDc 207..346 CDD:238005 110/138 (80%)
DEAH box 315..318 2/2 (100%)
Helicase_C 489..604 CDD:278689 90/114 (79%)
HAND 750..848 CDD:286232 73/98 (74%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 819..840 14/20 (70%)
SANT 851..890 CDD:238096 33/38 (87%)
SLIDE 905..1017 CDD:286233 87/111 (78%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167848240
Domainoid 1 1.000 470 1.000 Domainoid score I450
eggNOG 1 0.900 - - E2759_KOG0385
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H55711
Inparanoid 1 1.050 1492 1.000 Inparanoid score I106
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54891
OrthoDB 1 1.010 - - D144251at33208
OrthoFinder 1 1.000 - - FOG0001113
OrthoInspector 1 1.000 - - otm43184
orthoMCL 1 0.900 - - OOG6_100877
Panther 1 1.100 - - LDO PTHR10799
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2588
SonicParanoid 1 1.000 - - X1240
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1615.800

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