DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and SMARCAD1

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001121901.1 Gene:SMARCAD1 / 56916 HGNCID:18398 Length:1028 Species:Homo sapiens


Alignment Length:668 Identity:221/668 - (33%)
Similarity:338/668 - (50%) Gaps:125/668 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EENSNETTSDAATS-----SSGEKEAE--FDNKIEADRSRRFDFLLKQTEIFTHFMTNSA----- 65
            |::..::.||..:|     ||||:..|  :..||                  .||:.:::     
Human   356 EDSEYDSGSDVGSSLDEDYSSGEEVMEDGYKGKI------------------LHFLQDASIGELT 402

  Fly    66 --------KSPTKPKGRP---------KKIKDKDKEKDVADHRHRKTEQEEDEELL-----AED- 107
                    |:....:.||         |..|.....:|:.  .|.||..:|.:.::     .|| 
Human   403 LIPQCSQKKAQKITELRPFNSWEALFTKMSKTNGLSEDLI--WHCKTLIQERDVVIRLMNKCEDI 465

  Fly   108 --SATKEIFRFDAS--------PAYI-KSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTL 161
              ..||::.....:        |:.: :|..::.||..||||:..::::|:|||||||||||||:
Human   466 SNKLTKQVTMLTGNGGGWNIEQPSILNQSLSLKPYQKVGLNWLALVHKHGLNGILADEMGLGKTI 530

  Fly   162 QTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPG 226
            |.|:.|.||....|. |||:::||.||:.||:.|...|||:|:.:|..|.|:.|.....::....
Human   531 QAIAFLAYLYQEGNN-GPHLIVVPASTIDNWLREVNLWCPTLKVLCYYGSQEERKQIRFNIHSRY 594

  Fly   227 E-WDVCVTSYEMCIR---EKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTP 287
            | ::|.||:|...|.   ::|:|::....|.:.||.|.:||..|...:.|......||||:||||
Human   595 EDYNVIVTTYNCAISSSDDRSLFRRLKLNYAIFDEGHMLKNMGSIRYQHLMTINANNRLLLTGTP 659

  Fly   288 LQNNLHELWALLNFLLPDVFNSS-EDFDEWFNTNTCLGDDALITR----LHA--VLKPFLLRRLK 345
            :||||.||.:||||::|.:|:|| .:....|::.|...|:..|..    .||  ::|||:|||:|
Human   660 VQNNLLELMSLLNFVMPHMFSSSTSEIRRMFSSKTKSADEQSIYEKERIAHAKQIIKPFILRRVK 724

  Fly   346 AEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYL 410
            .||.|:|.|||:......:|:.|...|..:..:....:|.....:...:.|::|||||..|||.|
Human   725 EEVLKQLPPKKDRIELCAMSEKQEQLYLGLFNRLKKSINNLVTEKNTEMCNVMMQLRKMANHPLL 789

  Fly   411 F--------------------DGAEPGPP--------------------------YTTDTHLVYN 429
            .                    ...|..|.                          :..|..|:.:
Human   790 HRQYYTAEKLKEMSQLMLKEPTHCEANPDLIFEDMEVMTDFELHVLCKQYRHINNFQLDMDLILD 854

  Fly   430 SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFN 494
            |||..:|..:|.:|:::|.||::|||.|.||||||.......:.|.||||:|...:|...|.|||
Human   855 SGKFRVLGCILSELKQKGDRVVLFSQFTMMLDILEVLLKHHQHRYLRLDGKTQISERIHLIDEFN 919

  Fly   495 MDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITES 559
            .|... |:|:|||:||||||||.:|:|||::|.|.||..|.||.||.||:||.|:|.|.:||::.
Human   920 TDMDI-FVFLLSTKAGGLGINLTSANVVILHDIDCNPYNDKQAEDRCHRVGQTKEVLVIKLISQG 983

  Fly   560 TVEEKIVERAEVKLRLDK 577
            |:||.:::..:.||:|::
Human   984 TIEESMLKINQQKLKLEQ 1001

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 6/51 (12%)
SNF2_N 131..411 CDD:278600 115/290 (40%)
DEXDc 148..287 CDD:238005 59/142 (42%)
HELICc 422..553 CDD:238034 65/130 (50%)
HAND 697..796 CDD:286232
SANT 797..838 CDD:197842
SANT 799..838 CDD:238096
SLIDE 853..965 CDD:286233
SMARCAD1NP_001121901.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..82
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..251
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 302..328
Pox_D5 <318..362 CDD:308746 1/5 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 354..373 4/16 (25%)
SNF2_N 476..>1000 CDD:331286 193/525 (37%)
DEGH box 628..631 2/2 (100%)
Nuclear localization signal. /evidence=ECO:0000255 721..738 10/16 (63%)
DEGD box 1007..1010
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D61251at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.920

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