DRSC/TRiP Functional Genomics Resources

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Protein Alignment Iswi and Chd3

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_649111.1 Gene:Chd3 / 40111 FlyBaseID:FBgn0023395 Length:892 Species:Drosophila melanogaster


Alignment Length:639 Identity:235/639 - (36%)
Similarity:344/639 - (53%) Gaps:69/639 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 RFDASPAYIKSG--EMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKHFKNQA 177
            :::..|.::|..  ::..:||.|::|:...:..||..|||||||||||:||:..|..|....:..
  Fly   252 KYEDQPVFLKEAGLKLHPFQIEGVSWLRYSWGQGIPTILADEMGLGKTIQTVVFLYSLFKEGHCR 316

  Fly   178 GPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTF--------------IRDVLMPGEW 228
            ||.::.||.|||.||..|.:.|.|.|..|..:|.:..|...              :|:.....::
  Fly   317 GPFLISVPLSTLTNWERELELWAPELYCVTYVGGKTARAVIRKHEISFEEVTTKTMRENQTQYKF 381

  Fly   229 DVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLH 293
            :|.:||||....:.:.....:|..||:|||||:::.:||...||.:::...:||:|||||||||.
  Fly   382 NVMLTSYEFISVDAAFLGCIDWAALVVDEAHRLRSNQSKFFRILSKYRIGYKLLLTGTPLQNNLE 446

  Fly   294 ELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAEVEKRLKPKKEM 358
            ||:.|||||....||..:.|...|   |.:..:..:.|||.:|:|.:||||||:|.|.:.||.|.
  Fly   447 ELFHLLNFLSSGKFNDLQTFQAEF---TDVSKEEQVKRLHEILEPHMLRRLKADVLKSMPPKSEF 508

  Fly   359 KIFVGLSKMQRDWYTKVLLKDIDVVN--GAGKVEKMRLQNILMQLRKCTNHPYLFDGA------E 415
            .:.|.||.||:.:|..:|.|:...:|  |.|:|  ..|.||:|.||||.||||||..|      .
  Fly   509 IVRVELSSMQKKFYKHILTKNFKALNQKGGGRV--CSLLNIMMDLRKCCNHPYLFPSAAEEATIS 571

  Fly   416 PGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRLDGQ 480
            |...|...: |...|||:.:|.|:|.:|:....|||:|||||:||::||.:.....|.|.|:||.
  Fly   572 PSGLYEMSS-LTKASGKLDLLSKMLKQLKADNHRVLLFSQMTKMLNVLEHFLEGEGYQYDRIDGS 635

  Fly   481 TPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHRIG 545
            ...:.|.:.|..||...|..|:|:||||||||||||||||.|||:||||||..|:||..||||:|
  Fly   636 IKGDLRQKAIDRFNDPVSEHFVFLLSTRAGGLGINLATADTVIIFDSDWNPHNDVQAFSRAHRMG 700

  Fly   546 QKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFGANQVF 610
            |||:|.::|.:|.::|||:|::.|:.|:.|..:|::.|  :...:...:|||:.:|:|||...:|
  Fly   701 QKKKVMIYRFVTHNSVEERIMQVAKHKMMLTHLVVRPG--MGGMTTNFSKDELEDILRFGTEDLF 763

  Fly   611 SSKETDITDEDIDVILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVYQFEGEDW-RE 674
            ..              .:.||...:.||..|.|..::           .|..     |.|.| .|
  Fly   764 KD--------------GKSEAIHYDDKAVADLLDRTN-----------RGIE-----EKESWANE 798

  Fly   675 KQKLNALGNWIEPPKRERKANYAVDA------YFREALRVSEPKAPKAPRPPKQ 722
            ......:.::......|...:|..||      |:...:..|:||.||..:...|
  Fly   799 YLSSFKVASYATKEDHEEHDDYNNDAENTDPFYWENLMGKSQPKLPKKQKKQSQ 852

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603
SNF2_N 131..411 CDD:278600 118/295 (40%)
DEXDc 148..287 CDD:238005 53/152 (35%)
HELICc 422..553 CDD:238034 69/130 (53%)
HAND 697..796 CDD:286232 9/32 (28%)
SANT 797..838 CDD:197842
SANT 799..838 CDD:238096
SLIDE 853..965 CDD:286233
Chd3NP_649111.1 PHD2_CHD_II 37..79 CDD:277007
CHROMO 85..147 CDD:237991
CHROMO 181..233 CDD:214605
SNF2_N 270..561 CDD:278600 118/295 (40%)
DEXDc 288..440 CDD:238005 53/151 (35%)
Helicase_C 585..700 CDD:278689 63/114 (55%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467159
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.840

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