DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and CG4049

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_611885.3 Gene:CG4049 / 37860 FlyBaseID:FBgn0034976 Length:1669 Species:Drosophila melanogaster


Alignment Length:1216 Identity:263/1216 - (21%)
Similarity:427/1216 - (35%) Gaps:463/1216 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EENSNETTSDAATSS-SGEKEAEFDNKIEADRSRRFDFLLKQTEIFTHFMTNSAKSPTKPKGRPK 76
            ||.:::|..|:.:|| ||       ..||       |.|.|...:                 :|.
  Fly   281 EEIASDTFDDSNSSSLSG-------GSIE-------DVLHKGASV-----------------QPS 314

  Fly    77 KIKDKDKEKDVADH---RHRKTEQEEDEELLAEDSAT------KEIFRFDASPAYI------KSG 126
            ::...|...|  |.   ...:.|:|:||:|...|.||      |:|:........:      ..|
  Fly   315 EVVTIDDSSD--DDCILLSEEEEEEDDEDLNESDDATNSGMHVKDIYNVPDENGQVVVNMAHPEG 377

  Fly   127 E------------MRDYQIRGLNWMISLYEN------------GINGILADEMGLGKTLQTISLL 167
            |            ::.:||.|:.:   ||:|            |...|||..||||||||.:|..
  Fly   378 EETLYLAPQIAKVIKPHQIGGVRF---LYDNIIESTRRYNKSSGFGCILAHSMGLGKTLQVVSFC 439

  Fly   168 G-YLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRA----------VCLIGDQDTRNTFIRD 221
            . :|:|  ..|...:.::|.:|||||::||..|.|....          :.::.||....|....
  Fly   440 DIFLRH--TSAKTVLCVMPINTLQNWLSEFNMWIPRYSTDSNVRPRNFDIFVLNDQQKTLTARAK 502

  Fly   222 VLMPGEW----DVCVTSYEMC-----------IREKSVFKK---------FNWRY---------- 252
            |::  .|    .|.:..||:.           .|:.||.:.         .|..|          
  Fly   503 VIL--NWVHDGGVLLIGYELFRLLALKLVKTRKRKGSVIRPDGMDSSSDLMNLVYEALVKPGPDL 565

  Fly   253 LVIDEAHRIKNEKSKLSEILREFKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWF 317
            ::.||.|||||..:.:|..|:|.:|..|:::||.||||||.|.|.:::|:.|:...:..:|...|
  Fly   566 VICDEGHRIKNSHAGISLALKEIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPNYLGTRTEFCNMF 630

  Fly   318 ----NTNTCLG---DDALITR-----LHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRD 370
                ....|:.   ||..:.|     ||::|..|:.||....::..|..|.|..|.|.::..||.
  Fly   631 ERPIQNGQCVDSTPDDIKLMRYRAHVLHSLLLGFVQRRSHTVLQLTLPQKYEYVILVKMTAFQRK 695

  Fly   371 WY---------TKV-----------------------LLK----DIDV----------------- 382
            .|         ||.                       .||    |:|:                 
  Fly   696 LYDTFMTDVVRTKAFPNPLKAFAVCCKIWNHPDVLYNFLKKCETDLDLEIDEEVTKGAATPIVEP 760

  Fly   383 ---------------VNGAG----------KVEKMRLQNI-------LMQLRK------------ 403
                           :||:|          |.|...|.||       ...|.|            
  Fly   761 SADSSLSLASPLEKKINGSGDPINSIETFSKAENQTLFNIPASSDLNAKYLNKSPSFYDEKPEPL 825

  Fly   404 ----------------------------------------------------------------- 403
                                                                             
  Fly   826 NYGSFGSEGKNNYWMDSSILPKPGCVEVIKQTDTNMSSNFESITGSSEIVDLDTNEIKTVETTIQ 890

  Fly   404 --CTNHPYLFDGAEPGPP------------------------------------YTTD------T 424
              |:|: .|.:|...|.|                                    :..|      :
  Fly   891 APCSNN-QLDNGCNAGKPSEWNAAGSKNSSGVAAAEPFKKLLKSKQRNEEFSCSWAVDLMKNYVS 954

  Fly   425 HLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCH----------W-RNYNYCRLD 478
            .|:.||.||.|...:|.:....|.|:|:|||....|::||.|..          | :|.:|.|||
  Fly   955 GLISNSPKMEIFFCILKESLNLGDRILLFSQSLLTLNLLEVYLKSSYVPGSNQLWTKNSSYFRLD 1019

  Fly   479 GQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAHR 543
            |.|..::|.|.:.|||.:::.| ||::|||||.|||||..|:.|||:|:.|||..|.||:.|.:|
  Fly  1020 GSTSSQERERLVNEFNANSNVK-LFLISTRAGSLGINLTGANRVIIFDASWNPCHDTQAVYRIYR 1083

  Fly   544 IGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQG--GRLVDNRSNQLNKDEMLNIIRFGA 606
            .||.|...|:|::.:..:|:||.:|...|        ||  .|:||    :.|.:..|::     
  Fly  1084 YGQTKPCFVYRIVMDRCLEKKIYDRQIKK--------QGMSDRIVD----ECNPEAHLSM----- 1131

  Fly   607 NQVFSSKETDIT------DEDIDVILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVY 665
                    .|||      |.|.|.:.|..::.....|....|...|...:..|..|....:::..
  Fly  1132 --------KDITNLCQDYDSDEDTVEEVNKSTGDLSKPGSPSEEGSKPGSANMSPNASNKSNNGP 1188

  Fly   666 QFEGEDWREKQKLNALGNWIEPPKRERK--ANYAV-------------------DAYFREAL--- 706
            ....:|....:..|...:  .|.|.|:.  ..:||                   :.:..|:|   
  Fly  1189 TKPLDDQNTPKSPNGASH--SPIKTEKNDGQEHAVHVDGIINTILDMHRHCVTKEPFMHESLLVD 1251

  Fly   707 ----RVSEPKAPKAPR----PPKQPIVQDFQFFPPRL-FELLDQEIYYFRKTVGYKVPKNTELGS 762
                ::|:.:..:|.|    ..|..:.|.|.:.|.:: :::::.:.....|.:..::..||. .|
  Fly  1252 QKDRKLSQAEKRQAHRSYELEKKAAVNQRFTYAPAKMNYKIVNNDGTVITKPMNQQIKTNTS-SS 1315

  Fly   763 DATKVQREEQRKIDEAEPLTEEEI------------QEKENLL------------SQGFTAWTKR 803
            ...:..|.....:.:.:.:|.:|:            .:|.|::            ::|.  :.:.
  Fly  1316 TGGRSTRWIPADVWQRQGMTAQEMTLPLDVVIPTNSADKANIILKAGQRVMVLKSAKGI--YMQL 1378

  Fly   804 DFNQFIKAN-------EKYGRDDIDNIAKD-----VEGKTPEEVIE 837
            |..:.|...       ||..:||:.:|..|     .:.::|||.::
  Fly  1379 DSGKIIAIRTTAKTEPEKTNKDDVIDITDDGDTDTTKPQSPEEDVK 1424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 5/36 (14%)
SNF2_N 131..411 CDD:278600 107/512 (21%)
DEXDc 148..287 CDD:238005 52/183 (28%)
HELICc 422..553 CDD:238034 60/147 (41%)
HAND 697..796 CDD:286232 20/153 (13%)
SANT 797..838 CDD:197842 11/53 (21%)
SANT 799..838 CDD:238096 11/51 (22%)
SLIDE 853..965 CDD:286233
CG4049NP_611885.3 SNF2_N 394..730 CDD:278600 91/342 (27%)
DEXDc 420..598 CDD:238005 50/181 (28%)
HELICc 958..1093 CDD:238034 58/135 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45467160
Domainoid 1 1.000 47 1.000 Domainoid score I705
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.930

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