DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and Smarca2

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001004446.1 Gene:Smarca2 / 361745 RGDID:1302988 Length:1597 Species:Rattus norvegicus


Alignment Length:1192 Identity:342/1192 - (28%)
Similarity:542/1192 - (45%) Gaps:316/1192 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EKEAEFDNKIEADRSRRFDFLLKQTE---------IFTHFMTNSAKSPTKPKGRPKKIKD----- 80
            |.|..:...|:..:.||..:||:||:         ::.|....:||...|.:.|.||.::     
  Rat   516 EDEEGYRKLIDQKKDRRLAYLLQQTDEYVANLTNLVWEHKQAQAAKEKKKRRRRRKKAEENAEGG 580

  Fly    81 -----------------------------------------------------------KDKEKD 86
                                                                       .|.|:.
  Rat   581 EPALGPDGEPIDESSQMSDLPVKVTHTETGKVLFGPEAPKASQLDAWLEMNPGYEVAPRSDSEES 645

  Fly    87 VADHRHRKTEQE----EDEELLAEDSATKEIFRFDA----------------------------- 118
            .:|:.....|:|    |.||.:..|..:||:...||                             
  Rat   646 ESDYEEEDEEEESSRQETEEKILLDPNSKEVSEKDARQIIETAKQDVDDEYSMQYSARGSQSYYT 710

  Fly   119 -----------SPAYIKSGEMRDYQIRGLNWMISLYENGINGILADEMGLGKTLQTISLLGYLKH 172
                       ..|.:.:|.::.||::||.||:|||.|.:|||||||||.|||:|||:|:.||..
  Rat   711 VAHAISERVEKQSALLINGTLKHYQLQGLEWMVSLYNNNLNGILADEMGPGKTIQTIALITYLME 775

  Fly   173 FKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNTFIRDVLMPGEWDVCVTSYEM 237
            .|...||:::|||.|||.||..||.||.||...:...|....|.:.:.. |..|:::..:|:||.
  Rat   776 HKGLNGPYLIIVPLSTLSNWTYEFDKWAPSAVKISYKGTPAMRRSLVPQ-LRSGKFNALLTTYEY 839

  Fly   238 CIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILR-EFKTANRLLITGTPLQNNLHELWALLNF 301
            .|::|.:..|..|:|:::||.||:||...||:::|. .:....|:|:|||||||.|.||||||||
  Rat   840 IIKDKHILAKIRWKYMIVDEGHRMKNHHCKLTQVLNTHYVAPRRILLTGTPLQNKLPELWALLNF 904

  Fly   302 LLPDVFNSSEDFDEWFNTNTCLGDD----------ALITRLHAVLKPFLLRRLKAEVEKRLKPKK 356
            |||.:|.|...|::|||....:..:          .:|.|||.||:||||||||.|||.:|..|.
  Rat   905 LLPTIFKSCSTFEQWFNAPFAMTGERVDLNEEETILIIRRLHKVLRPFLLRRLKKEVESQLPEKV 969

  Fly   357 EMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMR-----LQNILMQLRKCTNHPYLFDGAEP 416
            |..|...:|.:|:..|..:..|.|.:.:|:.|.:|.:     |.|.:|||||..||||:|...|.
  Rat   970 EYVIKCDMSALQKILYRHMQAKGILLTDGSEKDKKGKGGAKTLMNTIMQLRKICNHPYMFQHIEE 1034

  Fly   417 GPPYTTDTHLVYN------------SGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHW 469
                :...||.|:            |||..:||::||||:....|||:|.|||.::.|:|||..:
  Rat  1035 ----SFAEHLGYSNGVINGAELYRASGKFELLDRILPKLRATNHRVLLFCQMTSLMTIMEDYFAF 1095

  Fly   470 RNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMD 534
            ||:.|.||||.|..|||...:::||...|..|:|:|||||||||:||..||.|:|:||||||..|
  Rat  1096 RNFLYLRLDGTTKSEDRAALLKKFNEPGSQYFIFLLSTRAGGLGLNLQAADTVVIFDSDWNPHQD 1160

  Fly   535 LQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEML 599
            |||.||||||||:.:|||.||.|.::|||||:..|:.||.:|:.|||.| :.|.:|:...:...|
  Rat  1161 LQAQDRAHRIGQQNEVRVLRLCTVNSVEEKILAAAKYKLNVDQKVIQAG-MFDQKSSSHERRAFL 1224

  Fly   600 NIIRFGANQVFSSKETDITDED------------------IDVILERGEAKTAEQKAALDSLGES 646
            ..|.  .::..:.:|.::.|::                  :|:...|.:|:..::|..|  :.|.
  Rat  1225 QAIL--EHEEENEEEDEVPDDETLNQMIARREEEFDLFMRMDMDRRREDARNPKRKPRL--MEED 1285

  Fly   647 SLRTFTMDTNGEAGTSSVYQFEGEDWREKQKLNALGNWIEPPKRERKANYAVDAYFREALRVSEP 711
            .|.::.:..:.|     |.:...|:  |::|:...|:      |:|:     |..:.:||  :|.
  Rat  1286 ELPSWIIKDDAE-----VERLTCEE--EEEKIFGRGS------RQRR-----DVDYSDAL--TEK 1330

  Fly   712 KAPKAPRPPKQPIVQDFQFFPPRLFELLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKID 776
            :..:|        ::|..      .|.:::|:                      ::::.::|:..
  Rat  1331 QWLRA--------IEDGN------LEEMEEEV----------------------RLKKRKRRRNV 1359

  Fly   777 EAEPLTEEEIQEKENLLSQGFTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAV 841
            :.:|: :|:::                      ||.::.||...:.::.:    .|:...:.||:
  Rat  1360 DKDPV-KEDVE----------------------KAKKRRGRPPAEKLSPN----PPKLTKQMNAI 1397

  Fly   842 ------FWERCTELQDIERI--MGQIERGEGKIQRRLS-------IKKALDQKMSRYRAP--FHQ 889
                  :.:||    ::|::  ..|:|.......|:||       .:|.|.:.....|.|  |.:
  Rat  1398 IDTVINYKDRC----NVEKVPCNSQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKK 1458

  Fly   890 LRLQYGNNKGKNYTEIE-DRFLVCMLHK---LGFDKENVYEE---LRAAIRASPQFRFDWFIKSR 947
            ::.:..|:|.::..::| |..|:|  |.   ...:...:||:   |::..:::.|       |..
  Rat  1459 IKERIRNHKYRSLGDLEKDVMLLC--HNAQTFNLEGSQIYEDSIVLQSVFKSARQ-------KIA 1514

  Fly   948 TALELQRRCNTLITLIERENIELEEKERAEKK---------KKAPKGSVSAGSGSASSNTPAPAP 1003
            ...|.:...|      |.|..|.||:..||.|         ||..||. ..|.|....|.....|
  Rat  1515 KEEESEEESN------EEEEEEDEEESEAEAKSVKVKIKLNKKEEKGR-DTGKGKKRPNRGKAKP 1572

  Fly  1004 -------QPKASQKRKSEVVAT 1018
                   ..:..:..:||...|
  Rat  1573 VVSDFDSDEEQDENEQSEASGT 1594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 11/45 (24%)
SNF2_N 131..411 CDD:278600 133/295 (45%)
DEXDc 148..287 CDD:238005 60/139 (43%)
HELICc 422..553 CDD:238034 74/142 (52%)
HAND 697..796 CDD:286232 11/98 (11%)
SANT 797..838 CDD:197842 5/40 (13%)
SANT 799..838 CDD:238096 5/38 (13%)
SLIDE 853..965 CDD:286233 25/129 (19%)
Smarca2NP_001004446.1 QLQ 173..207 CDD:286024
HSA 443..515 CDD:214727
BRK 597..639 CDD:197800 0/41 (0%)
SNF2_N 734..1029 CDD:278600 133/295 (45%)
DEXDc 751..890 CDD:238005 60/139 (43%)
Helicase_C 1056..1171 CDD:278689 66/114 (58%)
SnAC 1266..1333 CDD:291293 18/88 (20%)
Bromodomain 1340..>1426 CDD:295360 17/144 (12%)
Bromo_SNF2L2 1389..1513 CDD:99947 26/136 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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