DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and Smarca5

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_001100889.1 Gene:Smarca5 / 307766 RGDID:1308832 Length:995 Species:Rattus norvegicus


Alignment Length:1005 Identity:733/1005 - (72%)
Similarity:847/1005 - (84%) Gaps:35/1005 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EKEAEFDNKIEADRSRRFDFLLKQTEIFTHFMTNSA-KSPTKP----KGRPKKIKD-KDKEKDVA 88
            |.:..::.|::.||:.||::||||||:|.||:..:| |:||.|    .|||:..|| |.....|.
  Rat    18 EPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRVKKDEKQNLLSVG 82

  Fly    89 DHRHRKTEQEEDEELLAEDS-ATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLYENGINGILA 152
            |:|||:||||||||||.|.| ||....||:.||:|:|.|::||||:|||||:|||||||||||||
  Rat    83 DYRHRRTEQEEDEELLTESSKATNVCTRFEDSPSYVKWGKLRDYQVRGLNWLISLYENGINGILA 147

  Fly   153 DEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCLIGDQDTRNT 217
            |||||||||||||||||:||::|..|||:|:||||||.||::|||:|.|:||:||||||::.|..
  Rat   148 DEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMSEFKRWVPTLRSVCLIGDKEQRAA 212

  Fly   218 FIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILREFKTANRLL 282
            |:||||:|||||||||||||.|:|||||||||||||||||||||||||||||||:|||||.||||
  Rat   213 FVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIKNEKSKLSEIVREFKTTNRLL 277

  Fly   283 ITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNTNTCLGDDALITRLHAVLKPFLLRRLKAE 347
            :|||||||||||||:||||||||||||::|||.||:||.||||..|:.|||.||:||||||:||:
  Rat   278 LTGTPLQNNLHELWSLLNFLLPDVFNSADDFDSWFDTNNCLGDQKLVERLHMVLRPFLLRRIKAD 342

  Fly   348 VEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNGAGKVEKMRLQNILMQLRKCTNHPYLFD 412
            |||.|.||||:||:||||||||:|||::|:||||::|.|||::||||.|||||||||.|||||||
  Rat   343 VEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDILNSAGKMDKMRLLNILMQLRKCCNHPYLFD 407

  Fly   413 GAEPGPPYTTDTHLVYNSGKMAILDKLLPKLQEQGSRVLIFSQMTRMLDILEDYCHWRNYNYCRL 477
            |||||||||||.|||.|||||.:||||||||:||||||||||||||:||||||||.||||.||||
  Rat   408 GAEPGPPYTTDMHLVTNSGKMVVLDKLLPKLKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRL 472

  Fly   478 DGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINLATADVVIIYDSDWNPQMDLQAMDRAH 542
            ||||||::|...|..:|..||.||:|||||||||||||||||||||:||||||||:|||||||||
  Rat   473 DGQTPHDERQDSINAYNEPNSTKFVFMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAH 537

  Fly   543 RIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQGGRLVDNRSNQLNKDEMLNIIRFGAN 607
            ||||.|.|||||.||::||||:||||||:|||||.:|||.|||||...|::.|||||.:||.||.
  Rat   538 RIGQTKTVRVFRFITDNTVEERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGAT 602

  Fly   608 QVFSSKETDITDEDIDVILERGEAKTAEQKAALDSLGESSLRTFTMDTNGEAGTSSVYQFEGEDW 672
            .||:|||::|||||||.|||||..||||....|..:||||||.|||||.     ||||.|||||:
  Rat   603 HVFASKESEITDEDIDGILERGAKKTAEMNEKLSKMGESSLRNFTMDTE-----SSVYNFEGEDY 662

  Fly   673 REKQKLNALGNWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPIVQDFQFFPPRLFE 737
            |||||: |...||||||||||||||||||||||||||||||||||||||||.|||||||||||||
  Rat   663 REKQKI-AFTEWIEPPKRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFE 726

  Fly   738 LLDQEIYYFRKTVGYKVPKNTELGSDATKVQREEQRKIDEAEPLTEEEIQEKENLLSQGFTAWTK 802
            ||::||.|:|||:|||||::.:| .:|.:.|:|||.|||||.||.:||::|||.||:||||.|.|
  Rat   727 LLEKEILYYRKTIGYKVPRSPDL-PNAAQAQKEEQLKIDEAGPLNDEELEEKEKLLTQGFTNWNK 790

  Fly   803 RDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQ 867
            ||||||||||||:|||||:|||::||||||||||||:|||||||.||||||:||.||||||.:||
  Rat   791 RDFNQFIKANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQ 855

  Fly   868 RRLSIKKALDQKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAI 932
            ||:|||||||.|:.||:|||||||:.||.||||||||.|||||:||||||||||||||:|||..|
  Rat   856 RRISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELRQCI 920

  Fly   933 RASPQFRFDWFIKSRTALELQRRCNTLITLIERENIELEEKERAEKKKKAPKGSVSAGSGSASSN 997
            |.|||||||||:|||||:|||||||||||||||||:||||||:|||||:.||.|           
  Rat   921 RNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPS----------- 974

  Fly   998 TPAPAPQPKASQKRKSEVVATSSNSKKKKK 1027
                      :||||.:........|||.|
  Rat   975 ----------TQKRKMDGAPDGRGRKKKLK 994

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 16/37 (43%)
SNF2_N 131..411 CDD:278600 222/279 (80%)
DEXDc 148..287 CDD:238005 112/138 (81%)
HELICc 422..553 CDD:238034 106/130 (82%)
HAND 697..796 CDD:286232 73/98 (74%)
SANT 797..838 CDD:197842 34/40 (85%)
SANT 799..838 CDD:238096 32/38 (84%)
SLIDE 853..965 CDD:286233 91/111 (82%)
Smarca5NP_001100889.1 SNF2_N 126..406 CDD:278600 222/279 (80%)
DEXDc 143..282 CDD:238005 112/138 (81%)
Helicase_C 425..540 CDD:278689 94/114 (82%)
HAND 686..771 CDD:286232 66/85 (78%)
SANT 785..826 CDD:197842 34/40 (85%)
SANT 787..826 CDD:238096 32/38 (84%)
SLIDE 841..953 CDD:286233 91/111 (82%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 469 1.000 Domainoid score I434
eggNOG 1 0.900 - - E2759_KOG0385
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 1490 1.000 Inparanoid score I94
OMA 1 1.010 - - QHG54891
OrthoDB 1 1.010 - - D144251at33208
OrthoFinder 1 1.000 - - FOG0001113
OrthoInspector 1 1.000 - - otm45254
orthoMCL 1 0.900 - - OOG6_100877
Panther 1 1.100 - - O PTHR10799
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1240
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1413.840

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