DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Iswi and snf22

DIOPT Version :9

Sequence 1:NP_523719.1 Gene:Iswi / 36390 FlyBaseID:FBgn0011604 Length:1027 Species:Drosophila melanogaster
Sequence 2:NP_588472.2 Gene:snf22 / 2538881 PomBaseID:SPCC1620.14c Length:1680 Species:Schizosaccharomyces pombe


Alignment Length:950 Identity:320/950 - (33%)
Similarity:479/950 - (50%) Gaps:151/950 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 EKEAEFDNKIEADRSRRFDFLLKQTEIFTHFMTNSAK--------SPTKPKGR-----PKKIKDK 81
            :.||.:...::..:..|...|||||:.:...:|.:.:        ..|..||.     ...|.::
pombe   777 DDEAAYLQLLDKAKDTRITHLLKQTDQYLENLTRAVRIQQSNIHSGNTSGKGSNSAELEAPISEE 841

  Fly    82 DKEKD---VADHRHRKTEQEEDEELLAEDSATKEIFRFDASPAYIKSGEMRDYQIRGLNWMISLY 143
            ||..|   ||...|.:.||                      |.....|.::|||::||.||:|||
pombe   842 DKNLDYFKVAHRIHEEVEQ----------------------PKIFVGGTLKDYQLKGLEWMLSLY 884

  Fly   144 ENGINGILADEMGLGKTLQTISLLGYLKHFKNQAGPHIVIVPKSTLQNWVNEFKKWCPSLRAVCL 208
            .|.:|||||||||||||:|||:.:.||...|||.||.::|||.|||.||:.||:||.||::.:..
pombe   885 NNNLNGILADEMGLGKTIQTIAFITYLIEKKNQQGPFLIIVPLSTLTNWIMEFEKWAPSVKKIAY 949

  Fly   209 IGDQDTRNTFIRDVLMPGEWDVCVTSYEMCIREKSVFKKFNWRYLVIDEAHRIKNEKSKLSEILR 273
            .|....|.| ::..:....::|.:|::|..|:::.:..:..|.:::|||.|||||.:|||:..|.
pombe   950 KGPPQLRKT-LQSQIRSSNFNVLLTTFEYIIKDRPLLSRIKWVHMIIDEGHRIKNTQSKLTSTLS 1013

  Fly   274 E-FKTANRLLITGTPLQNNLHELWALLNFLLPDVFNSSEDFDEWFNT---NTCLGDD-------- 326
            . :.:..||::|||||||||.||||||||:||.:|||.:.|||||||   ||. |.|        
pombe  1014 TYYHSQYRLILTGTPLQNNLPELWALLNFVLPKIFNSIKSFDEWFNTPFANTG-GQDKIGLNEEE 1077

  Fly   327 --ALITRLHAVLKPFLLRRLKAEVEKRLKPKKEMKIFVGLSKMQRDWYTKVLLKDIDVVNG-AGK 388
              .:|.|||.||:|||.||||.:|||.|..|.|..|...||.:|...|.::....:..|:| .||
pombe  1078 ALLIIKRLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHGMLFVDGEKGK 1142

  Fly   389 VEKMRLQNILMQLRKCTNHPYLFDGAEPG-PPYTTDTHLVYN-SGKMAILDKLLPKLQEQGSRVL 451
            .....|||.:|||:|..|||::|:..|.. .|..|:..|::. :||..:||::||||...|.:.|
pombe  1143 TGIKGLQNTVMQLKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKFELLDRILPKLFLTGHKTL 1207

  Fly   452 IFSQMTRMLDILEDYCHWRNYNYCRLDGQTPHEDRNRQIQEFNMDNSAKFLFMLSTRAGGLGINL 516
            :|.|||:::.|:|||...:|:.|.||||.|..:||...:.:||...|..::|||||||||||:||
pombe  1208 MFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPKSDVYIFMLSTRAGGLGLNL 1272

  Fly   517 ATADVVIIYDSDWNPQMDLQAMDRAHRIGQKKQVRVFRLITESTVEEKIVERAEVKLRLDKMVIQ 581
            .|||.|||:|:||||..||||.||||||||.|:||:.|||||.::||.|:.||:.||.||..|||
pombe  1273 QTADTVIIFDTDWNPHQDLQAQDRAHRIGQTKEVRILRLITEKSIEENILSRAQYKLDLDGKVIQ 1337

  Fly   582 GGRLVDNRSNQLNKDEML-NIIRFGANQVFSSKETDITDEDIDVILERGE------AKTAEQKAA 639
            .|:. ||:|....::..| :::....:........::.|::::.::.|.:      .|..:::||
pombe  1338 AGKF-DNKSTPEEREAFLRSLLEHDGDDDHDLTYGELQDDELNELISRTDEELVLFKKLDKERAA 1401

  Fly   640 LDSLGESS--LRTFTMDTNGEAGTSSVYQFEGEDWREKQKLNALGNWIEPPKRERKANYAVDAYF 702
            .|..|:..  .|..|::.     ....|:.|.:.:..:........::|..:|.|.:....:...
pombe  1402 TDIYGKGKPLERLLTVNE-----LPDFYKVEVDSFAVQSSSELEDQYLERKRRRRNSISYTELTL 1461

  Fly   703 REALRVSEPKAPKAP----RPPKQ---------PIVQD-----------------------FQFF 731
            .|...|.:|.:...|    ||.|:         |:.|:                       .:.|
pombe  1462 DELNTVDDPSSTLMPRKRGRPRKKTNSGSSLSTPLSQESSLARSGRKNTPSYKQKALRRYCMEIF 1526

  Fly   732 PPRLFELLDQEIYYFRKTVGYKVPKNTELGSD----------ATKVQR--EEQRKIDEAEPLTEE 784
             .||:.|..::..:......|  |.|.:|..|          ..|::|  :..|..|..|.:.:.
pombe  1527 -ERLYNLQSEDGRFVNGLFLY--PPNRKLYPDYYIIIKRPIALGKIKRNIKNDRYGDVGELIADF 1588

  Fly   785 EIQEKENLLSQGFTAWTKRDFNQFIKANEKYG--RDDIDNIAKDVEGKTPEEVIE----YNAVFW 843
            .:.                 ||.....||::.  .:|    ||.:| ||.:||||    .|::..
pombe  1589 MLM-----------------FNNAYTYNEEHSIVYED----AKLME-KTLKEVIEDLEKNNSLHA 1631

  Fly   844 ERCTELQDIERIMGQIERGEGKIQRRLSIKKALDQKMSRY 883
            .....|.:.:..:..:|..|.::.....|..|.|.|:..|
pombe  1632 YEEEALNEEQASLVFLENSEAELPLDSGIVSAEDDKVITY 1671

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
IswiNP_523719.1 DBINO <30..67 CDD:290603 9/44 (20%)
SNF2_N 131..411 CDD:278600 140/294 (48%)
DEXDc 148..287 CDD:238005 61/139 (44%)
HELICc 422..553 CDD:238034 71/131 (54%)
HAND 697..796 CDD:286232 23/146 (16%)
SANT 797..838 CDD:197842 14/46 (30%)
SANT 799..838 CDD:238096 14/44 (32%)
SLIDE 853..965 CDD:286233 6/30 (20%)
snf22NP_588472.2 NHS 216..>396 CDD:291922
DUF4452 <229..292 CDD:291292
QLQ 428..463 CDD:214931
HepA 582..1345 CDD:223627 258/592 (44%)
HSA 711..775 CDD:284861
DEXDc 889..1028 CDD:238005 61/139 (44%)
Helicase_C 1187..1301 CDD:278689 63/113 (56%)
COG5076 1395..1673 CDD:227408 56/306 (18%)
SnAC 1398..1463 CDD:291293 11/69 (16%)
Bromo_SNF2 1518..1620 CDD:99950 25/126 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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