DRSC/TRiP Functional Genomics Resources

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Protein Alignment spt4 and spt4

DIOPT Version :10

Sequence 1:NP_610802.1 Gene:spt4 / 36387 FlyBaseID:FBgn0028683 Length:116 Species:Drosophila melanogaster
Sequence 2:NP_596596.1 Gene:spt4 / 2540700 PomBaseID:SPBC21C3.16C Length:105 Species:Schizosaccharomyces pombe


Alignment Length:99 Identity:41/99 - (41%)
Similarity:58/99 - (58%) Gaps:8/99 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 RACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVAKWQRLS 78
            ||||:|.:|.....|...||.|        :..|:|...||..|:||:|:.:||:||||:|||:.
pombe    10 RACLICGIVLPHSVFANKGCPN--------DGVDDVETFTSPVFEGIMAMMSPTESWVARWQRID 66

  Fly    79 RFTRGIYAISVSGTLPQSTLRDMKNRGIVYKSRD 112
            .||.||||..|.|.|.:..:..::.|||.|:.|:
pombe    67 TFTPGIYATRVQGVLNEDVVESLRRRGINYRPRN 100

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
spt4NP_610802.1 Spt4 11..108 CDD:153422 39/93 (42%)
spt4NP_596596.1 SPT4 1..105 CDD:227530 39/94 (41%)

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