DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amph and bin1b

DIOPT Version :9

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001314899.1 Gene:bin1b / 447863 ZFINID:ZDB-GENE-030425-1 Length:576 Species:Danio rerio


Alignment Length:691 Identity:188/691 - (27%)
Similarity:282/691 - (40%) Gaps:213/691 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 KGI---MLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRC 66
            ||:   .||.:|||...||:||::|.|||.|.|.|..|::.:.|||:|.....:|||:...|:..
Zfish     6 KGVNAGKLASNVQKRLTRAQEKVMQKLGKADETKDTAFEEQVANFNKQMNEGTKLQKDLKAYLLA 70

  Fly    67 VRAAQAASKTLMDSVCEIYEPQWSGYDALQA------------QTGASESLWADFAHKLGDQVLI 119
            |:.....||.|.|.:.|:|:|:|.|.:.:.:            ....::.||.||..||.|..:|
Zfish    71 VKTMHECSKRLHDCLAEMYDPEWFGKEEVDSIAEEMIEKEMDNNLEDTDLLWQDFHEKLLDNAVI 135

  Fly   120 PLNTYTGQFPEMKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTK-------------- 170
            .::.|..|||::|.::.||.|||:|:|..||.|.::|  ..|:||:.|:.|              
Zfish   136 SMDAYLAQFPDIKARIAKRERKLVDFDSARHHFASVQ--KGKKKDEAKIAKPLALVEKAAPVWAQ 198

  Fly   171 -------------GREQLEE----ARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVF 218
                         .|.|.||    |::.:|.:|.:|.:|||.|::||:...|...:::...|:.|
Zfish   199 GILTAHQIAQTNLTRNQAEEDLGRAQKVFEEINYDLQEELPTLWNSRVGLYVNTFRSVSGLEETF 263

  Fly   219 HNETAKIYSELEAIVDKLATESQRGSNTLRKQTSNPIKTSSPVQSPVNKLNNANINSNYQNQITT 283
            |.:..|:...|..|:.||  |.||       .....:.|:|..:|.    :.||     .||.| 
Zfish   264 HRDMGKLNQNLSDIMTKL--EEQR-------VAKKGVTTASTGKSD----DAAN-----HNQET- 309

  Fly   284 NGGSSLANSPTSTSSSLQEPRFDSVSSTPEPRPESPAAALVSATPSSPVENGVTTKSLERPELSG 348
                  :::|.|.|.....|        |..||..||:       |..|:........|..|:|.
Zfish   310 ------SDAPKSPSKLRDVP--------PVSRPPRPAS-------SQEVKPDKIINLFEDAEVSD 353

  Fly   349 LNASAKATTTTQ----TSPTEDKAVVSEAVKPS-----------ETEGAAVAA-----SVTPA-- 391
            .|      ||||    .|....:...|.||.||           :..|...||     .||||  
Zfish   354 SN------TTTQPEQGASWNSWEPAQSPAVSPSQQWDSDNEADAQPHGQPYAAPEWDDDVTPAVQ 412

  Fly   392 ---PPA------TPAQI--NGNNNEPSIV-------KEGGKQPKELPSTTSNAEAAAEAAANNGN 438
               ||:      .|||.  :|....|:..       .|.|.|..::..|.:|   .|..||.:..
Zfish   413 SYEPPSWDEQDGAPAQSGWDGQTAAPAQPDWEDEHWDEEGSQVGQVQDTETN---WANDAAQDWE 474

  Fly   439 SIEEHKQKKLGNDTTVTATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPVPVV 503
            :..|..|.:     .:.:.|..|||..|            |||                      
Zfish   475 AESEPPQWE-----ELQSNEAPTVTNGS------------SDT---------------------- 500

  Fly   504 NRHSVNNLNKNPFEDDDERIYEVPADANTADLPPGVLYRVKATYGYAKEDVDELSFEIGDLIRVI 568
                                          :|||.||::||..:.|:..|.|||..:.||::.|:
Zfish   501 ------------------------------ELPPSVLFKVKTMHDYSATDSDELDLKAGDIVLVL 535

  Fly   569 EYDDPEDQEEGWLMGQKEG---TNE----KGLFPANFTRPI 602
            .:.:|::.::|||||.||.   .|:    ||:||.|||:.:
Zfish   536 PFANPDEADDGWLMGVKESHWLQNKNLLAKGVFPENFTQKL 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 78/254 (31%)
SH3_Amphiphysin 539..602 CDD:212724 28/69 (41%)
bin1bNP_001314899.1 BAR 30..283 CDD:299863 78/256 (30%)
SH3 506..576 CDD:302595 28/69 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577737
Domainoid 1 1.000 177 1.000 Domainoid score I3543
eggNOG 1 0.900 - - E1_KOG3771
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H62497
Inparanoid 1 1.050 200 1.000 Inparanoid score I3747
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366218at2759
OrthoFinder 1 1.000 - - FOG0001177
OrthoInspector 1 1.000 - - otm24508
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46514
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R565
SonicParanoid 1 1.000 - - X1098
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.890

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