DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amph and amph

DIOPT Version :9

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_021334960.1 Gene:amph / 393804 ZFINID:ZDB-GENE-040426-1711 Length:1308 Species:Danio rerio


Alignment Length:653 Identity:182/653 - (27%)
Similarity:276/653 - (42%) Gaps:131/653 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MTENKGIMLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIR 65
            |.|.|..:.||:|||...||:||:||.|||.|.|.||.|:..:.||.||:...:|||:|...||.
Zfish     1 MAEIKTGIFAKNVQKRINRAQEKVLQKLGKADETKDEQFEQCVQNFKRQEFEGSRLQREMKAYIA 65

  Fly    66 CVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPE 130
            .|:..|.||..|.:|:.|:|||.|.|.|.:.......::||.||..||.|..:..|.||..|||:
Zfish    66 AVKGMQQASMNLTESLHEVYEPDWHGKDDVMTIGKNCDALWEDFHQKLVDSTINTLETYLTQFPD 130

  Fly   131 MKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPA 195
            :|.:|.||:|||||||..||..:.||.:.  .:::.::.|..|.|::|:|.::.||..|.||||.
Zfish   131 LKVRVAKRSRKLIDYDSARHHLETLQTST--MRNEKRIAKAEEDLKKAQRVFDDLNVGLQDELPT 193

  Fly   196 LYDSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLR-----KQTSNPI 255
            |:|||:.|.|:..:.:.:.|..||.|.:.:..:|..:::|||.:......|::     |:.|.|:
Zfish   194 LWDSRVGFYVSTFKNVSSLEARFHREISFLCHKLYEVMNKLAEQHSDKMFTIQGAPREKRDSGPL 258

  Fly   256 ---KTSSPV--QSPVNKLNNANINSNYQNQITTNGGSSLANSPTSTSSSLQEPRFDSVSSTPEPR 315
               :|.||.  :||                     .||.|.||..|...         :|...||
Zfish   259 RLARTPSPPDDESP---------------------DSSPAASPNHTLRP---------TSPGPPR 293

  Fly   316 PESPAAALVSATPSSPVENGVTTKSLER-----------PELSGLNASA---------------- 353
            |:|| :.|....|..|......|:.|::           ||:|..:...                
Zfish   294 PKSP-SQLKMGPPKPPPPKVTPTRELQQEQIIDLFDGGFPEISVTSPQPNERPGESLLDLDFDPF 357

  Fly   354 KATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTPAPPATPAQINGNNNEPSIVKEGGKQPKE 418
            |..|:|....|:  :.||:.:......|.|    ..||.|||.|....|     ...:.|.....
Zfish   358 KPDTSTPIGQTQ--SPVSQTLPWDLWTGDA----AQPAQPATDAGFTAN-----WAADFGSSATT 411

  Fly   419 LPSTTSNAEAAAEAAA---NNGNSIEEHKQKKLGNDTTVTATETVTVTQHSVTSTDTDNIVTISD 480
            :...::|.:.||:...   .:|...:...|.: |.    |||:       .|.:.||:|   ..:
Zfish   412 VTDESANTQPAADGQGWPPADGWPTDSTPQPQ-GE----TATD-------EVRAWDTEN---YPE 461

  Fly   481 TNTDTDTKTSTGTSQKGRPVPVVNRHSV----NNLNKNPFEDDDER---IYEVPADANTADLP-- 536
            .|.|.| ..:.|..:..:..|...:..|    .:...|..|..:|:   :.|......|..|.  
Zfish   462 PNPDCD-PCAVGGGEAEQQHPGQGQEGVEEGQTDWATNQVEWAEEKTGFVSEEGGAEETVGLQAM 525

  Fly   537 PGVLYRVKATYGYAKEDVDELSFEIGDLIR------------------VIEYDDPEDQEEGWLMG 583
            ||:::    |..:.:|..|.:.....|..|                  ..|:.|...|..||:..
Zfish   526 PGIIF----TNEFGQEIQDPMEGAGADSSRWGLSSQVDLDGSGSEYETAEEWGDVPGQNGGWVSA 586

  Fly   584 QKE 586
            ..|
Zfish   587 DDE 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 85/211 (40%)
SH3_Amphiphysin 539..602 CDD:212724 11/66 (17%)
amphXP_021334960.1 BAR_Amphiphysin_I_II 26..236 CDD:153295 85/211 (40%)
Atrophin-1 <248..483 CDD:331285 62/292 (21%)
FtsK <985..>1149 CDD:332908
SH3 1237..1307 CDD:327375
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170577739
Domainoid 1 1.000 177 1.000 Domainoid score I3543
eggNOG 1 0.900 - - E1_KOG3771
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 200 1.000 Inparanoid score I3747
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366218at2759
OrthoFinder 1 1.000 - - FOG0001177
OrthoInspector 1 1.000 - - otm24508
orthoMCL 1 0.900 - - OOG6_105748
Panther 1 1.100 - - O PTHR46514
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R565
SonicParanoid 1 1.000 - - X1098
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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