DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amph and Bin3

DIOPT Version :10

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001013204.1 Gene:Bin3 / 361065 RGDID:1308253 Length:253 Species:Rattus norvegicus


Alignment Length:256 Identity:59/256 - (23%)
Similarity:109/256 - (42%) Gaps:37/256 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 GRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKT------ 76
            |:.|::|      |.:|.:..|:.......:.:....||||:..   :...|..|.||:      
  Rat     9 GQPKKQI------VSKTVERDFEREYGKLQQLEEQTKRLQKDMK---KSTDADLAMSKSAVKISL 64

  Fly    77 --LMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRN 139
              |.:.:||..:.......||.......::...:..:::...|:.||..:...||.:...|::|.
  Rat    65 DLLSNPLCEQDQDFLRMVTALDTAMKRMDAFNQEKVNQIQKTVIEPLKKFGSIFPSLNMAVKRRE 129

  Fly   140 RKLIDYDGQRHSFQNLQANANKRKDD-------VKLTKGREQLEEARRTYEILNTELHDELPALY 197
            :.|.||.       .|||...|.::.       .||.:.||:|...|..:|..|.:|.||:|..|
  Rat   130 QALQDYG-------RLQAKVEKYEEKEKTGPVLAKLHQAREELRPVREDFEAKNKQLLDEMPRFY 187

  Fly   198 DSRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQTSNPIKTS 258
            :||:.:...:.::|...:.::::|..||:.:|...:|      |.|.:...::..|..|.|
  Rat   188 NSRLDYFQPSFESLIRAQVIYYSEMHKIFGDLTQQLD------QPGHSDEHRERENETKLS 242

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 51/226 (23%)
PTZ00449 <275..>396 CDD:185628
SH3_Amphiphysin 539..602 CDD:212724
Bin3NP_001013204.1 BAR_Bin3 12..236 CDD:153274 55/245 (22%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.