DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amph and Bin1

DIOPT Version :9

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_006526041.1 Gene:Bin1 / 30948 MGIID:108092 Length:603 Species:Mus musculus


Alignment Length:701 Identity:196/701 - (27%)
Similarity:297/701 - (42%) Gaps:206/701 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 NKGI---MLAKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIR 65
            :||:   .:|.:|||...||:||:||.|||.|.|.||.|:..:.|||:|.....||||:...|:.
Mouse     6 SKGVTAGKIASNVQKKLTRAQEKVLQKLGKADETKDEQFEQCVQNFNKQLTEGTRLQKDLRTYLA 70

  Fly    66 CVRAAQAASKTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPE 130
            .|:|...|||.|.:.:.|:|||:|.|.|........::.||.|:..||.||.|:.::||.||||:
Mouse    71 SVKAMHEASKKLSECLQEVYEPEWPGRDEANKIAENNDLLWMDYHQKLVDQALLTMDTYLGQFPD 135

  Fly   131 MKKKVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTK------------------------- 170
            :|.::.||.|||:|||..||.:::||  ..|:||:.|:.|                         
Mouse   136 IKSRIAKRGRKLVDYDSARHHYESLQ--TAKKKDEAKIAKPVSLLEKAAPQWCQGKLQAHLVAQT 198

  Fly   171 ------GREQLEEARRTYEILNTELHDELPALYDSRILFLVTNLQTLFATEQVFHNETAKIYSEL 229
                  ..|:|.:|::.:|.:|.:|.:|||:|::||:.|.|...|::...|:.||.|.:|:...|
Mouse   199 NLLRNQAEEELIKAQKVFEEMNVDLQEELPSLWNSRVGFYVNTFQSIAGLEENFHKEMSKLNQNL 263

  Fly   230 EAIVDKLATESQRGSNTL------RKQTS----------------------NPIKTSSPVQSPVN 266
            ..::  ::.|.|.||||.      ||:|.                      :|....||..:|  
Mouse   264 NDVL--VSLEKQHGSNTFTVKAQPRKKTKLFSRLRRKKNSDNAPEKGNKSPSPPPDGSPAATP-- 324

  Fly   267 KLNNANINSNYQNQITTNGGSSLANSPTSTSSSLQEPRFDSVSSTPEPRPESPAAALVS------ 325
                 .|..|::.: ..:|.|..|..|.|.|...:.|      ..|.|...:|:..:..      
Mouse   325 -----EIRVNHEPE-PASGASPGATIPKSPSQLRKGP------PVPPPPKHTPSKEMKQEQILSL 377

  Fly   326 -----------ATPS-----SPVENGVTTKSLERPELSGLNASAKATTTTQTS-------PTEDK 367
                       .|||     .|.....:...|:...|..:.:..||.|.:..|       |||.:
Mouse   378 FDDAFVPEISVTTPSQFEAPGPFSEQASLLDLDFEPLPPVASPVKAPTPSGQSIPWDLWEPTESQ 442

  Fly   368 AVVSEAVKPSETEGAAVAA--SVTPAP-PATPAQINGNNNEPSIVKEGGKQPKELPSTTSNAEAA 429
            |.:..:.:||..||:...|  |.|..| ||.||       |.|.|..|.::|.|        .||
Mouse   443 AGILPSGEPSSAEGSFAVAWPSQTAEPGPAQPA-------EASEVVGGAQEPGE--------TAA 492

  Fly   430 AEAAANNGNSIEEHKQKKLGNDTTVTATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTS 494
            :||.:::               ......||.:.|.:....                      |::
Mouse   493 SEATSSS---------------LPAVVVETFSATVNGAVE----------------------GSA 520

  Fly   495 QKGRPVPVVNRHSVNNLNKNPFEDDDERIYEVPADANTADLPPGVLYRVKATYGYAKEDVDELSF 559
            ..||                                  .|||||.:::|:|.:.|...|.|||..
Mouse   521 GTGR----------------------------------LDLPPGFMFKVQAQHDYTATDTDELQL 551

  Fly   560 EIGDLIRVIEYDDPEDQEEGWLMGQKEGT-NE-------KGLFPANFTRPI 602
            :.||::.||.:.:||:|:||||||.||.. |:       :|:||.|||..:
Mouse   552 KAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERV 602

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 84/242 (35%)
SH3_Amphiphysin 539..602 CDD:212724 29/70 (41%)
Bin1XP_006526041.1 BAR_Amphiphysin_I_II 31..272 CDD:153295 84/244 (34%)
PRK12323 <331..505 CDD:237057 46/210 (22%)
PRK14959 <415..>488 CDD:184923 24/79 (30%)
SH3_Bin1 531..602 CDD:213015 29/70 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167834722
Domainoid 1 1.000 188 1.000 Domainoid score I3307
eggNOG 1 0.900 - - E1_KOG3771
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 255 1.000 Inparanoid score I3159
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366218at2759
OrthoFinder 1 1.000 - - FOG0001177
OrthoInspector 1 1.000 - - otm42339
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46514
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R565
SonicParanoid 1 1.000 - - X1098
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1312.890

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