DRSC/TRiP Functional Genomics Resources

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Protein Alignment Amph and hob3

DIOPT Version :10

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_595489.1 Gene:hob3 / 2541160 PomBaseID:SPBC725.09C Length:264 Species:Schizosaccharomyces pombe


Alignment Length:272 Identity:74/272 - (27%)
Similarity:123/272 - (45%) Gaps:24/272 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 QKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASKTLM 78
            :|...||...::...|.|:||.|..|:.....:...:::|.:||||...|:..:||..|:...:.
pombe     7 KKAVNRAGTSVMMKTGHVERTVDREFETEERRYRTMESAAKKLQKEAKGYLDALRAMTASQTRIA 71

  Fly    79 DSVCEIYEPQWS--GYDALQAQTGASESLWADFAHKLG----DQVLIPLNTYTGQFPEMKKKVEK 137
            :::...|....|  |..|...|  ..|.|.||...:|.    ..||.|::.:...||::...:.|
pombe    72 NTIDAFYGDAGSKDGVSAYYRQ--VVEDLDADTVKELDGPFRTTVLDPISRFCSYFPDINAAITK 134

  Fly   138 RNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRIL 202
            ||.||:|:|..|...|.|....:  .|..||.:..::...|:..||.||.:|..|||.|...|:.
pombe   135 RNHKLLDHDAMRAKVQKLVDKPS--NDTTKLPRTEKEAAMAKEVYETLNNQLVSELPQLIALRVP 197

  Fly   203 FLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQTSNPI---KTSSPVQSP 264
            :|..:.:.|...:..|..|.          .:|:|...|...|::|:..||.:   |....:|| 
pombe   198 YLDPSFEALVKIQLRFCREG----------YEKMAQVQQYFDNSVREDYSNGLLDDKVEQVLQS- 251

  Fly   265 VNKLNNANINSN 276
            :..|:.|.:|::
pombe   252 MRDLSIAGLNNS 263

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 59/217 (27%)
PTZ00449 <275..>396 CDD:185628 0/2 (0%)
SH3_Amphiphysin 539..602 CDD:212724
hob3NP_595489.1 BAR_Rvs161p 20..241 CDD:153275 65/234 (28%)
Blue background indicates that the domain is not in the aligned region.

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