DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amph and amph-1

DIOPT Version :9

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_501711.1 Gene:amph-1 / 177797 WormBaseID:WBGene00010272 Length:461 Species:Caenorhabditis elegans


Alignment Length:615 Identity:167/615 - (27%)
Similarity:251/615 - (40%) Gaps:183/615 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 KSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAASK 75
            |.::|...|.|||:|:.:||...|.||:||.|..|.|:|..|..:|.|:..||...:|...:|.|
 Worm     7 KHLKKATNRTKEKLLEGIGKAKATQDEVFDQHAANLNKQSKSCEKLHKDVKNYSSALRTLLSAEK 71

  Fly    76 TLMDSVCEIYEPQWSG-------YDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKK 133
            .|.|::.:.|||:|..       :|.|..||...|.       .:.|.:...:..|..|||::||
 Worm    72 QLRDTIRDAYEPEWPDREHLTAIFDNLDIQTNELEK-------TVCDDLPQTVTQYVNQFPDLKK 129

  Fly   134 KVEKRNRKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYD 198
            |:|||.|||:|||..::||.:::| ::|:.:|.||.|...:|:.|.:.|..:|.||.:.|||::|
 Worm   130 KIEKRGRKLVDYDSAKNSFNSVKA-SSKKDNDPKLAKATMELQAAEQMYTEMNNELLEILPAVFD 193

  Fly   199 SRILFLVTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQTS--NPIKTSSPV 261
            |||.|.|..|||||....|:..:.:|.:.::...:|||. ||.......|.:..  .||.|:|..
 Worm   194 SRITFFVDTLQTLFNANSVYQTDASKFHKQIVMQLDKLG-ESMDYLRVARPEARALTPIDTTSLA 257

  Fly   262 QSPVNKLNNANINSNYQNQITTNGGSSLANSPTSTSSSLQEPRFDSVSSTPEPRP-ESPAAALVS 325
            .|......:.|.:.|          |||..:|:           .||..:|.|.| ..|..::||
 Worm   258 SSDAPATPDQNKSDN----------SSLRQTPS-----------PSVLPSPVPAPMAKPRESVVS 301

  Fly   326 ATPSSPVENGVTTKSLERPELSGLNASAKATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTP 390
            ...|                               |:|.:|    .:|....|            
 Worm   302 MANS-------------------------------TNPFDD----DDAEHDKE------------ 319

  Fly   391 APPATPAQINGNNNEPSIVKEGGKQPKELPSTTSNAEAAAEAAANNGNSIEEHKQKKLGNDTTVT 455
               |||..:           |...:.|..|...:...||||.|      |...|::|        
 Worm   320 ---ATPTDV-----------EEKFEAKVYPKLNAQQTAAAEQA------IAAAKREK-------- 356

  Fly   456 ATETVTVTQHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPVPVVNRHSVNNLNKNPFEDDD 520
                                            |.::                      |||:|:|
 Worm   357 --------------------------------KEAS----------------------NPFDDED 367

  Fly   521 ERIYEVPADANTADLPP------GV-------LYRVKATYGYAKEDVDELSFEIGDLIRVIEYDD 572
            :...||.......|..|      |:       ||.|.:|:.|...|.||||||.|..|:|||.::
 Worm   368 DESTEVEEAPKKKDPEPTPKPLDGITNEKRKTLYFVTSTHNYKAVDTDELSFEQGVQIKVIEANE 432

  Fly   573 PEDQEEGWLMGQKEGTNEKGLFPANFTRPI 602
            .:..::||.:|:.| ..::|:||.|||:.:
 Worm   433 DDQLDDGWRLGELE-DGKRGVFPENFTKKV 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 80/218 (37%)
SH3_Amphiphysin 539..602 CDD:212724 27/69 (39%)
amph-1NP_501711.1 BAR 22..240 CDD:299863 82/226 (36%)
NPF 252..>390 CDD:293209 47/287 (16%)
SH3 400..461 CDD:302595 27/61 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160158338
Domainoid 1 1.000 161 1.000 Domainoid score I2448
eggNOG 1 0.900 - - E1_KOG3771
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 177 1.000 Inparanoid score I2689
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366218at2759
OrthoFinder 1 1.000 - - FOG0001177
OrthoInspector 1 1.000 - - oto17313
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR46514
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R565
SonicParanoid 1 1.000 - - X1098
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.930

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