DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Amph and bin2

DIOPT Version :9

Sequence 1:NP_523717.1 Gene:Amph / 36383 FlyBaseID:FBgn0027356 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_002933750.1 Gene:bin2 / 100486620 XenbaseID:XB-GENE-983740 Length:656 Species:Xenopus tropicalis


Alignment Length:593 Identity:166/593 - (27%)
Similarity:267/593 - (45%) Gaps:130/593 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AKSVQKHAGRAKEKILQNLGKVDRTADEIFDDHLNNFNRQQASANRLQKEFNNYIRCVRAAQAAS 74
            ||:|||...||:||:||.||:...|.||:|:.....||:||...|||.|:.......|:|...:|
 Frog    13 AKNVQKRFTRAQEKVLQKLGRTLETKDEMFEQCAYLFNQQQNEGNRLYKDLKAVFSAVKAMHESS 77

  Fly    75 KTLMDSVCEIYEPQWSGYDALQAQTGASESLWADFAHKLGDQVLIPLNTYTGQFPEMKKKVEKRN 139
            |.|.:::..||:|.|.||:.|:......:.||.|:..|:.|||:..::.|..||||.::::.||.
 Frog    78 KRLSETLHVIYKPDWDGYNDLRPIVENDDLLWNDYEEKMSDQVVRIMDNYMAQFPEYRERIAKRG 142

  Fly   140 RKLIDYDGQRHSFQNLQANANKRKDDVKLTKGREQLEEARRTYEILNTELHDELPALYDSRILFL 204
            ||::|||..||..:.|| || |:||:.|:||..|:..:|:..:|.||.||.::||.||.||:...
 Frog   143 RKMVDYDSARHHLEALQ-NA-KKKDEGKITKAEEEFNKAQSIFEDLNKELREDLPVLYSSRVGCY 205

  Fly   205 VTNLQTLFATEQVFHNETAKIYSELEAIVDKLATESQRGSNTLRKQTSNPIKTSSPVQSPVNKLN 269
            ||..:.:.....||:.|.:|:..||..::.|           |.||.||.:.....|:|      
 Frog   206 VTIFKNISNLRDVFYKEMSKLNHELYDVMSK-----------LEKQHSNKVFVIKGVKS------ 253

  Fly   270 NANINSNYQNQITTNGGSSLANSPTSTSSSLQEPRFDSVSSTPEPRPESPAAALVSATPSSPVEN 334
                          |..|.:.:||.|:|||     |...|..||           ::|||     
 Frog   254 --------------NRKSLVISSPISSSSS-----FFMASIDPE-----------ASTPS----- 283

  Fly   335 GVTTKSLERP-ELSGLNASAKATTTTQTSPTEDKAVVSEAVKPSETEGAAVAASVTPAPPATPAQ 398
             |.|||:.:. |.|.|:::   ::.||.|.:.| ...:::::.|..|              ||.:
 Frog   284 -VNTKSVNQTCENSSLSSN---SSETQDSISMD-GNFTQSLENSSQE--------------TPNE 329

  Fly   399 INGNNNEPSIVKEGGKQPKELPSTTSNAEAAAEAAANNGNSIEEHKQKKLGNDTTVTATETVTVT 463
            ::.:.::.|.:|...:..:|      |..:..:..|.|....::|::            :..|..
 Frog   330 LSQSLSDNSGIKNSNEMEQE------NNMSTMDPMAGNKTDTQKHQE------------DAKTGK 376

  Fly   464 QHSVTSTDTDNIVTISDTNTDTDTKTSTGTSQKGRPVPVVNRHSVNNLNKNPFEDDDERIYEVPA 528
            ....|.....||  |.:.:...|..:|..:||||          :..|.|...|..||     .:
 Frog   377 SEEETQAGPYNI--IQERSGAIDQNSSAFSSQKG----------LGELMKRNLEASDE-----VS 424

  Fly   529 DANTADLPPGVLYRVKATYGYAKEDVDELSFEIGDL--------IRVIEYDDPEDQEEGWLM--G 583
            |..|..|.       :...|...:::|:   |:.|.        .:|...|:..|:::.:|.  |
 Frog   425 DGTTICLS-------RDQNGDTNKEIDK---ELNDAKPRELCQKAQVDSQDETHDKKQEFLSTNG 479

  Fly   584 QKEGTNEK 591
            .|: |.||
 Frog   480 LKD-TKEK 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
AmphNP_523717.1 BAR_Amphiphysin 26..238 CDD:153272 80/211 (38%)
SH3_Amphiphysin 539..602 CDD:212724 13/63 (21%)
bin2XP_002933750.1 BAR 29..239 CDD:386243 81/222 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 176 1.000 Domainoid score I3551
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1366218at2759
OrthoFinder 1 1.000 - - FOG0001177
OrthoInspector 1 1.000 - - otm47445
Panther 1 1.100 - - O PTHR46514
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X1098
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.020

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