DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sin3A and SNL4

DIOPT Version :9

Sequence 1:NP_001246282.1 Gene:Sin3A / 36382 FlyBaseID:FBgn0022764 Length:2066 Species:Drosophila melanogaster
Sequence 2:NP_001323064.1 Gene:SNL4 / 843342 AraportID:AT1G70060 Length:1326 Species:Arabidopsis thaliana


Alignment Length:1739 Identity:385/1739 - (22%)
Similarity:610/1739 - (35%) Gaps:670/1739 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly   264 GNATPRLKVEDALSYLDQVKYQYADQPQIYNNFLDIMKEFKSHCIDTPGVIERVSTLFKGHTELI 328
            |::..:|...|||:||..||.::.|:...|:.||::||:||:..:||.|||.||..||||:.|||
plant     4 GSSAQKLTTNDALAYLKAVKDKFQDKRDKYDEFLEVMKDFKAQRVDTTGVILRVKELFKGNRELI 68

  Fly   329 YGFNMFLPPGYKIEIHSDALGCSVPVVSMPSPPGAPTSTGTVHMLTGNSSMSGAGHIAIKTTNAA 393
            .|||.|||.|::|.:..:           ...|.||                             
plant    69 LGFNTFLPKGFEITLRPE-----------DDQPAAP----------------------------- 93

  Fly   394 TLTPAAGAGAAAAAAAVAQIQSAGAVNLMTHGGASLTQTTIHALQQATPPQSQSPGGGHVHVSVT 458
                                                                             
plant    94 ----------------------------------------------------------------- 93

  Fly   459 NSTAANAVVPGQPGISVSAHNVPQNYSRDRERATITPTGQVAGAAANVNASASIVVGGPPTPNSL 523
                                                                             
plant    94 ----------------------------------------------------------------- 93

  Fly   524 SELSPHGGAGGGPGAGAAQHNLHHIQQAHQSILLGETGQQNQPVEFNHAITYVNKIKNRFQNQPA 588
                                                    .:||||..||::|||||.|||....
plant    94 ----------------------------------------KKPVEFEEAISFVNKIKTRFQGDDR 118

  Fly   589 KYKKFLEILHDYQREQKVMKEGSLNQGKMLTEQEVYTQVAKLFGQDEDLLREFGQFLPDATNHQS 653
            .||.||:||:.|::|.|.:             .|||.:||.||....|||.||..||||.     
plant   119 VYKSFLDILNMYRKENKSI-------------TEVYHEVAILFRDHHDLLGEFTHFLPDT----- 165

  Fly   654 GQYMSKSASVHNDHGKRPTATLSGGAHITMSSASPAPSGSPLHLGATTLP---QIDKSAHAAAIG 715
                |.:||. ||..|.|..                      ..|..:||   |||.......|.
plant   166 ----SATAST-NDSVKVPVR----------------------DRGIKSLPTMRQIDLDKKDRIIT 203

  Fly   716 NLSAVNTSVSIKTYNNNQQQQNHVIGSGLNATR-----NDILFE---KDYHAGLQQQAHQRGAGV 772
            :    :.:.::||.|.:...:..::.......|     ||.:.:   |||. ||...:|:.    
plant   204 S----HPNRALKTENMDVDHERSLLKDSKEEVRRIDKKNDFMDDRDRKDYR-GLDHDSHKE---- 259

  Fly   773 GGHHHLAGTAAGANIGRPGVGASVMVSYDKEHRNNHHVQKYVGHAPNQNLTHGHNAKKSPSYGIP 837
                                                               |..|:||       
plant   260 ---------------------------------------------------HFFNSKK------- 266

  Fly   838 SVIGSMPHISDNSLDRSSPGISYATPPLPSGPHGQHNSGSATRRPGDDSLVGHYASGAPPAKRPK 902
                .:....|:|.:.|                             |.:..|...|||.|     
plant   267 ----KLIRKDDDSAEMS-----------------------------DQAREGDKFSGAIP----- 293

  Fly   903 PYCRDVSFSEASSKCTISDAAFFDKVRKALRSPEVYDN--FLRCLTLFNQEIVSKTELLGLVSPF 965
                  |.|....|....:.||.|:|:..|   :..||  |||||.|:::||:|:.||..|||..
plant   294 ------SSSTYDEKGHSQELAFVDRVKAKL---DTADNQEFLRCLNLYSKEIISQPELQSLVSDL 349

  Fly   966 LMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAATQRQGG--GSSNSSHDRGT------------ 1016
            :..:|||:..|..||.  ......||:.|:....:....|  .....|.|:.|            
plant   350 IGVYPDLMDAFKVFLA--QCDKNDGLLSGIVSKKSLWSEGKCPQPTKSLDKDTDREREKIERYRE 412

  Fly  1017 ------------SHQSAAEYVQDVDLSSCKRLGASYCALPQSTVPKKCSGRTALCREVLNDKWVS 1069
                        :.|..|:.:.::|||:|::...||..||::......|.:..:..:||||.|||
plant   413 RDREKERLEKVAASQKWAKPISELDLSNCEQCTPSYRRLPKNYPIPIASQKMEIGSQVLNDHWVS 477

  Fly  1070 FPTWASEDSTFVTSRKTQFEETIYRNIHRTEDERFELDLVIE-VNSATIRVLENLQKKMSRMSTE 1133
            . |..|||.:|...||.|:||:::    :.||:|||||:::| |.|||.||.|.|.|    :::.
plant   478 V-TSGSEDYSFKHMRKNQYEESLF----KCEDDRFELDMLLESVISATNRVEELLAK----INSN 533

  Fly  1134 EL---SKFHLDDHLGGTSQTIHQRAIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWRE 1195
            ||   :...::|||    ..::.|.|.|:|.|...:::..:|||.::|:|::|.|||.|:|||..
plant   534 ELKTDTPICIEDHL----TALNLRCIERLYSDHGLDVLDLLKKNAYLALPVILTRLKQKQEEWAR 594

  Fly  1196 AQKTFNKQWREQNEKYYLKSLDHQAINFKPNDMKALRSKSLFNEIETLYDERHDQEDDAM----- 1255
            .:..|||.|.:...|.|.:||||::..||..|.|.|.:|:|..||:.: .|:...||||:     
plant   595 CRTEFNKVWADIYTKNYHRSLDHRSFYFKQQDSKNLSTKALLAEIKEI-SEKKRGEDDALLALAA 658

  Fly  1256 ---EPFGPHLVLPYKDKTILDDAANLLIHHVKRQTG--IQKQEKQKIKQIIRQFVPDLFFAPRQP 1315
               .....::...|.|..:.:|...|    :|...|  ...::..|:.::..:|:..:|..|.:|
plant   659 GNRRTISSNMSFDYPDPDLHEDLYQL----IKYSCGEMCSTEQLDKVMKVWTEFLEPIFGVPSRP 719

  Fly  1316 LSDDERDDAF------------------------------------------------------- 1325
            ...::|:||.                                                       
plant   720 QGAEDREDAVKSTNHDREDQEDAVSPQNGASIANSMRSNGPRKVNESNQVRQASELDKDVTSSKT 784

  Fly  1326 --PFLVDDNTKMD-----VDSPLGRTESS-------TRNAKSTPSESASPARSNASTSSVTPAGI 1376
              ..|..|||:.|     :.:|..|.|:.       ..|:.:.|.:...|.| |...||::.||:
plant   785 SDALLSCDNTQNDKMPKNLTTPDERAETKQAVSIERAHNSNALPLDGLLPQR-NGKISSLSVAGL 848

  Fly  1377 -----------------------------------------------KKETDDSK-ATTGSFAPA 1393
                                                           |.|.::.: :.||.|...
plant   849 SNSNPKPALTSGTEELKPNYVNGPRVEIGDNPVIPNGTVAEWFAGEAKVEREEGELSPTGDFEED 913

  Fly  1394 SSAT-------ASSATPVDDATPSTSSAAAAASAASSST----VSGTEGKP-----KDDPLSSHK 1442
            :.|.       |.|.:..:|||...:||..::..:.:::    ||||:...     ::|.:..:|
plant   914 NYAVHGENDMEALSKSKENDATADDASAPRSSDGSGNTSHNGDVSGTDSGDGEDCYREDDIDHNK 978

  Fly  1443 EEGAGSTSSGVATSPRQAQDTAG--AGVDVEIK-LEHPADFSNPKLLPPHAHGQREDES---YTL 1501
            .|..|....|::..   ..||.|  ..:.:.:| |.|....:  |.:||..:.:..|:|   ..:
plant   979 VESEGEAEEGMSDG---HDDTEGDMPVLSISVKNLLHVKPLA--KYVPPALYDKDNDDSRKNSQV 1038

  Fly  1502 FFANNNWYLFLRLHAILCDRLHVMYERARLLAIEEERCRVNRRESTATALRLKPKPEIQVEDYYP 1566
            |:.|:::|:..|||.||.||:        |.|      ::|   |::...:.|........|.|.
plant  1039 FYGNDSFYVLFRLHQILYDRI--------LSA------KIN---SSSPDRKWKTSNPTNPADSYA 1086

  Fly  1567 TFLDMLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLDKVVSNAVRQLQYCVTERAALDCVELFA 1631
            ..:|.|.|:|||..|::.|||..|.:.|..:|:.|||||::...::.||....:.......:|:|
plant  1087 RIMDALYNLLDGTSDNSKFEDDCRAIIGTQSYVLFTLDKLIYKLIKHLQAVAADEMDNKLQQLYA 1151

  Fly  1632 TEQRRGCTGGFCRDAHKTFDREMSYQRKAESILNEENCFKVYIYKIDC------RVTIELLDSEP 1690
            .|:        .|...|..|  ..|...|..:|.:|:     ||:|:|      :::|:|||...
plant  1152 YEK--------SRKPEKFLD--AVYYENALVLLPDED-----IYRIECEQSTPSKLSIQLLDYGH 1201

  Fly  1691 EEVDKPAALKAQKFSKYVERL---------ANPAL---------GGGGNTGRSDSALGNDSVVDG 1737
            ::.|..:......|:.|:..:         .||.:         ||......:|..    .:::|
plant  1202 DKPDVTSISMDPTFAAYLHNVFLSYQPNAKENPRIYLKRNKRKNGGDDELCTTDEV----KIING 1262

  Fly  1738 SDIKTEADE-------DTAELRYREGGIGGAGKARFLVRNKRRSKLLEE 1779
            .:.|.....       ||.::.:|                .:|.|||.:
plant  1263 LECKITCSSSKVSYVLDTEDVLHR----------------AKRRKLLNQ 1295

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sin3ANP_001246282.1 Sin3 238..1719 CDD:227889 374/1670 (22%)
PAH 291..335 CDD:280780 24/43 (56%)
PAH 588..645 CDD:280780 21/56 (38%)
PAH 936..980 CDD:280780 20/45 (44%)
Sin3_corepress 1034..1133 CDD:285494 39/99 (39%)
Sin3a_C 1502..>1710 CDD:293484 58/213 (27%)
SNL4NP_001323064.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 112 1.000 Domainoid score I2056
eggNOG 1 0.900 - - E1_COG5602
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I567
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253485at2759
OrthoFinder 1 1.000 - - FOG0000820
OrthoInspector 1 1.000 - - otm2965
orthoMCL 1 0.900 - - OOG6_101145
Panther 1 1.100 - - LDO PTHR12346
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X631
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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