DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sin3A and AT5G35610

DIOPT Version :9

Sequence 1:NP_001246282.1 Gene:Sin3A / 36382 FlyBaseID:FBgn0022764 Length:2066 Species:Drosophila melanogaster
Sequence 2:NP_198411.1 Gene:AT5G35610 / 833533 AraportID:AT5G35610 Length:155 Species:Arabidopsis thaliana


Alignment Length:84 Identity:31/84 - (36%)
Similarity:44/84 - (52%) Gaps:0/84 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   278 YLDQVKYQYADQPQIYNNFLDIMKEFKSHCIDTPGVIERVSTLFKGHTELIYGFNMFLPPGYKIE 342
            ||..||.:..::.:||..||.:|..:.:..||..||...|..|||...|.|.|||.|||.|::|:
plant    14 YLKIVKNKLQNKREIYVRFLQVMTAYSAQRIDPSGVKSVVKELFKEDQEPISGFNTFLPKGFEIK 78

  Fly   343 IHSDALGCSVPVVSMPSPP 361
            ...|..|..:.:....:||
plant    79 PECDQNGFKIKLECEQTPP 97

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sin3ANP_001246282.1 Sin3 238..1719 CDD:227889 31/84 (37%)
PAH 291..335 CDD:280780 18/43 (42%)
PAH 588..645 CDD:280780
PAH 936..980 CDD:280780
Sin3_corepress 1034..1133 CDD:285494
Sin3a_C 1502..>1710 CDD:293484
AT5G35610NP_198411.1 PAH 27..71 CDD:280780 18/43 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5602
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253485at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

Return to query results.
Submit another query.