DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sin3A and SNL1

DIOPT Version :9

Sequence 1:NP_001246282.1 Gene:Sin3A / 36382 FlyBaseID:FBgn0022764 Length:2066 Species:Drosophila melanogaster
Sequence 2:NP_186781.4 Gene:SNL1 / 821265 AraportID:AT3G01320 Length:1372 Species:Arabidopsis thaliana


Alignment Length:1808 Identity:389/1808 - (21%)
Similarity:604/1808 - (33%) Gaps:708/1808 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   235 PLGKAQTPPSSVVANSIPVGGT----TPPQGQSGNATPRLKVEDALSYLDQVKYQYADQPQIYNN 295
            |||.::    ..:....||.|:    ...:|.|...:.:|...||||||.:||..:.||.:.|:.
plant    18 PLGSSR----GQLCGQSPVHGSGDTEEEEEGGSRRVSQKLTTNDALSYLREVKEMFQDQREKYDR 78

  Fly   296 FLDIMKEFKSHCIDTPGVIERVSTLFKGHTELIYGFNMFLPPGYKIEI--HSDALGCSVPVVSMP 358
            ||::||:||:...||.|||.||..|||||..||||||.|||.||:|.:  ..|||          
plant    79 FLEVMKDFKAQRTDTGGVIARVKELFKGHNNLIYGFNTFLPKGYEITLIEEDDAL---------- 133

  Fly   359 SPPGAPTSTGTVHMLTGNSSMSGAGHIAIKTTNAATLTPAAGAGAAAAAAAVAQIQSAGAVNLMT 423
                 |..|                                                        
plant   134 -----PKKT-------------------------------------------------------- 137

  Fly   424 HGGASLTQTTIHALQQATPPQSQSPGGGHVHVSVTNSTAANAVVPGQPGISVSAHNVPQNYSRDR 488
                                                                             
plant   138 ----------------------------------------------------------------- 137

  Fly   489 ERATITPTGQVAGAAANVNASASIVVGGPPTPNSLSELSPHGGAGGGPGAGAAQHNLHHIQQAHQ 553
                                                                             
plant   138 ----------------------------------------------------------------- 137

  Fly   554 SILLGETGQQNQPVEFNHAITYVNKIKNRFQNQPAKYKKFLEILHDYQREQKVMKEGSLNQGKML 618
                         |||..||.:|||||.||::....||.|||||:.|::|.|.:|          
plant   138 -------------VEFEQAINFVNKIKMRFKHDEHVYKSFLEILNMYRKENKEIK---------- 179

  Fly   619 TEQEVYTQVAKLFGQDEDLLREFGQFLP-DATNHQSGQYMSKSASVHNDHGKRPTATLSGGAHIT 682
               |||.:|:.||....|||.:|.:||| ...:|.:.|:....|..::|.|..|..         
plant   180 ---EVYNEVSILFQGHLDLLEQFTRFLPASLPSHSAAQHSRSQAQQYSDRGSDPPL--------- 232

  Fly   683 MSSASPAPSGSPLHLGATTLPQIDKSAHAAAIGNLSAVNTSVSIKTYNNNQQQQNHVIGSGLNAT 747
                        ||     ..|::|.....   ...|:....|::.|:.|               
plant   233 ------------LH-----QMQVEKERRRE---RAVALRGDYSVERYDLN--------------- 262

  Fly   748 RNDILFEKDYHAGLQQQAHQRGAGVGGHHHLAGTAAGANIGRPGVGASVMVSYDKEHRNNHHVQK 812
             :|....|     :|::..:|                               .|||:|.......
plant   263 -DDKTMVK-----IQREQRKR-------------------------------LDKENRARRGRDL 290

  Fly   813 YVGHAPNQNLTHGHNAKKSPSYGIPSVIGSMPHISDNSLDRSSPGISYATPPLPSGPHGQHNSGS 877
            ....|...||.|....:||                                              
plant   291 DDREAGQDNLHHFPEKRKS---------------------------------------------- 309

  Fly   878 ATRRPGDDSLVGHYASGAPPAKRPKPYCRDVSFSEASSKCTISDAAFF--DKVRKALRSPEVYDN 940
             :||                |:..:.|....|.||..:..::...||.  :||:..|.|.:.|..
plant   310 -SRR----------------AEALEAYSGSASHSEKDNLKSMYKQAFVFCEKVKDRLCSQDDYQT 357

  Fly   941 FLRCLTLFNQEIVSKTELLGLVSPFLMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAATQRQGG 1005
            ||:||.:|:..|:.:.:|..|||..|.|||||:..|..|.     :....:.||.     ||..|
plant   358 FLKCLNIFSNGIIQRKDLQNLVSDLLGKFPDLMDEFNQFF-----ERCESITDGF-----QRLAG 412

  Fly  1006 GSSN---SS----------HDRGTSH-----------QSAAEY----VQDVDLSSCKRLGASYCA 1042
            ..|.   ||          .::.:.|           |...||    :|::|||.|:....||..
plant   413 VMSKKLFSSEEQLSRPMKVEEKESEHKPELEAVKETEQCKKEYMGKSIQELDLSDCECCTPSYRL 477

  Fly  1043 LPQSTVPKKCSGRTALCREVLNDKWVSFPTWASEDSTFVTSRKTQFEETIYRNIHRTEDERFELD 1107
            ||........|.|:.|..|||||.|||. |..|||.:|...|:.|:||:::    |.||:|||||
plant   478 LPADYPIPIASQRSELGAEVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLF----RCEDDRFELD 537

  Fly  1108 LVIEVNSATIRVLENLQKKMSRMSTEELSKFHLDDHLGGTSQTIHQRAIHRIYGDKSGEIITGMK 1172
            :::|..|:..|..|:|...::.........|.::||.    ..::.|.|.|:|||...::|..:.
plant   538 MLLESVSSAARSAESLLNIITEKKISFSGSFRIEDHF----TALNLRCIERLYGDHGLDVIDILN 598

  Fly  1173 KNPFVAVPIVLKRLKVKEEEWREAQKTFNKQWREQNEKYYLKSLDHQAINFKPNDMKALRSKSLF 1237
            |||..|:|::|.|||.|:.||::.:..|:|.|.....|.:.|||||::..||..|.|.|.:|||.
plant   599 KNPATALPVILTRLKQKQGEWKKCRDDFDKVWANVYAKNHYKSLDHRSFYFKQQDSKNLSAKSLL 663

  Fly  1238 NEIETLYDERHDQEDDAM--------EPFGPHLVLPYKDKTILDDAANLLIHHVKRQTGIQKQEK 1294
            .||:.| .|:...:||.:        :|..|:|...|.::.|.:|... ::.....:....|::.
plant   664 AEIKEL-KEKSQNDDDVLLSISAGYRQPINPNLEYEYLNRAIHEDMFK-VVQFSCEELCSTKEQL 726

  Fly  1295 QKIKQIIRQFVPDLFFAPRQPLSDDERDDAFPFLVDD---NTK-MDVD---SPLGRTESS----T 1348
            .|:.::...|:..:...|.:....|        ||:|   |.| :||:   ||.|....|    |
plant   727 SKVLRLWENFLEAVLGVPPRAKGTD--------LVEDVVINPKTLDVNHSTSPNGEAAVSSGGDT 783

  Fly  1349 RNAKSTPSESASPARSNAST--------------------------------------------- 1368
            ....|...:||:....|:|:                                             
plant   784 ARLASRKLKSAANGDENSSSGTFKHGIGLLNKDSTGKENLEDVEIANRDGVACSAVKPQKEQETG 848

  Fly  1369 ---------------------SSVT-PAG-------IKKE------------------------- 1379
                                 ||:: |:|       :.||                         
plant   849 NEAEKRFGKPIPMDISERAAISSISIPSGAENNHCVVGKEVLPGAHEIQAKPSDTLTDIHHDVDS 913

  Fly  1380 -----------------------TDDSKAT---------------TGSFAPASSATASSATPVDD 1406
                                   :|.||.|               .|..:|......:.....|.
plant   914 IETVHSTQGGDVGNSIVLANGLRSDSSKGTRNSDDPEGPSRNEKEEGELSPNGDFEDNFGVYKDH 978

  Fly  1407 ATPSTSSAAAAASAASSSTVSGTEGKPKDDPLSSHKEEGAGSTSSGVATS---PRQAQDTAGAGV 1468
            ...|||....:|.|...:..........||..|.:..|.:|:.|.|...|   .|:.::.....:
plant   979 GVKSTSKPENSAEAEVEADAEVENEDDADDVDSENASEASGTESGGDVCSQDEDREEENGEHDEI 1043

  Fly  1469 DVEIKLEHPADFSNPKLLPPHAHGQRE------------------------DE---SYTLFFANN 1506
            |.:.:.|..|:..:|.||    .|:.|                        ||   ...:|:.|:
plant  1044 DGKAESEGEAEGMDPHLL----EGESELLPQSERVLLSVRPLSKHVAAVLCDERTKDLQVFYGND 1104

  Fly  1507 NWYLFLRLHAILCDRLHVMYERARLLAIEEERCRVNRRESTATALRLKPKPEIQVEDYYPTFLDM 1571
            ::|:..|||.||.:|  ::|.               :|..:...|:.|...:....|.|..|:.:
plant  1105 DFYVLFRLHQILYER--ILYA---------------KRNCSGGELKSKNLKDTNAGDPYARFMRV 1152

  Fly  1572 LKNVLDGNMDSNTFEDTMREMFGIYAYISFTLDKVVSNAVRQLQYCVTERAALDCVELFATEQRR 1636
            |..:|||:.::..|||..|.:.|..:|:.|||||::...|:|||..|.:......::|:..|:  
plant  1153 LYGLLDGSAENTKFEDECRAIIGNQSYVLFTLDKLIYRLVKQLQAIVADEMDNKLLQLYEYEK-- 1215

  Fly  1637 GCTGGFCRDAHKTFDREMSYQRKAESILNEENCFKVYIYKIDC-----RVTIELLDSEPEEVDKP 1696
                  .|...:..|  ..|......:::|||     ||:::|     |::|:|:|:..|:.:..
plant  1216 ------SRKPGRVID--SVYYENVRVLVHEEN-----IYRLECSSLPSRLSIQLMDNIIEKPEAY 1267

  Fly  1697 AALKAQKFSKYVE-RLANPALGGGGN----------TGRSD--SALGNDSVVDGSDIKTEADE-- 1746
            |......|:.|:: .|.:.:.|....          ||..|  .|:....||:|.:.|.....  
plant  1268 AVSMDPTFASYMQTELLSVSSGKKEEGHDIVLQRNLTGLYDLCKAMEGVEVVNGLECKMSCSSYK 1332

  Fly  1747 -----DTAELRYREGGIGGAGKARFLVRNKRRSKLLEEQVRQLFEHRRNRIEQ 1794
                 ||.:               :..|.|::.|     ..||::..:.|:|:
plant  1333 IAYVLDTED---------------YFHRKKKKKK-----TEQLWQRNKVRVER 1365

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Sin3ANP_001246282.1 Sin3 238..1719 CDD:227889 369/1709 (22%)
PAH 291..335 CDD:280780 25/43 (58%)
PAH 588..645 CDD:280780 21/56 (38%)
PAH 936..980 CDD:280780 18/43 (42%)
Sin3_corepress 1034..1133 CDD:285494 37/98 (38%)
Sin3a_C 1502..>1710 CDD:293484 55/213 (26%)
SNL1NP_186781.4 Sin3 13..>672 CDD:227889 247/1048 (24%)
harmonin_N_like 46..144 CDD:299851 51/311 (16%)
PAH 74..118 CDD:280780 25/43 (58%)
PAH 159..203 CDD:280780 21/56 (38%)
PAH 353..397 CDD:280780 18/43 (42%)
HDAC_interact 467..563 CDD:214808 38/100 (38%)
Sin3a_C 1100..1343 CDD:293484 67/289 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 112 1.000 Domainoid score I2056
eggNOG 1 0.900 - - E1_COG5602
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 370 1.000 Inparanoid score I567
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D253485at2759
OrthoFinder 1 1.000 - - FOG0000820
OrthoInspector 1 1.000 - - otm2965
orthoMCL 1 0.900 - - OOG6_101145
Panther 1 1.100 - - O PTHR12346
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X631
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.830

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