Sequence 1: | NP_001246282.1 | Gene: | Sin3A / 36382 | FlyBaseID: | FBgn0022764 | Length: | 2066 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_001122442.1 | Gene: | sin-3 / 172628 | WormBaseID: | WBGene00004117 | Length: | 1507 | Species: | Caenorhabditis elegans |
Alignment Length: | 1783 | Identity: | 354/1783 - (19%) |
---|---|---|---|
Similarity: | 601/1783 - (33%) | Gaps: | 590/1783 - (33%) |
- Green bases have known domain annotations that are detailed below.
Fly 116 PVGA-GAQVAVGVGSA-----AGGGGVVVSTGSTGTQTLQYTTSYSVASIQAGGTLK-------- 166
Fly 167 -ANTADGANTVQIHVTGGGAANNPASAQTVSSSSQTGTIRQRTISGTQTVATAVGNLATISQQQP 230
Fly 231 V----QQSPLGKAQ------TPPSSV-------VANSIP-----VGGTT-------PPQGQSG-- 264
Fly 265 -NATPRLK-------VEDALSYLDQVKYQYADQPQIYNNFLDIMKEFKSHCIDTPGVIERVSTLF 321
Fly 322 KGHTELIYGFNMFLPPGYKIEIHSDALGCSVPVVSMPSPPGAPTSTGTVHMLTGNSSMSGAGHIA 386
Fly 387 IKTTNAATLTPAAGAGAAAAAAAVAQIQSAGAVNLMTHGGASLTQTTIHALQQATPPQSQSPGGG 451
Fly 452 HVHVSVTNSTAANAVVPGQPGISVSAHNVPQNYSRDRERATITPTGQVAGAAANVNASASIVVGG 516
Fly 517 PPTPNSLSELSPHGGAGGGPGAGAAQHNLHHIQQAHQSILLGETGQQN-----QPVEFN-----H 571
Fly 572 AITYVNKIKNRFQNQPAKYKKFLEILHDYQREQKVMKEGSLNQGKMLTEQEVYTQVAKLFGQDED 636
Fly 637 LLREFGQFL-----PDATNHQSGQYMSKSASVHNDHGKRPTATLSGGAHITMSSASPAPSGSPLH 696
Fly 697 LGATT--LPQIDKSAHAAAIGNLSAVNTSVSIKTYNNNQQQQNHVIGSGLNATRNDI-----LFE 754
Fly 755 KDYHAGLQQQAHQRGAGVGGHHHLAGTAAGANIGRPGVGASVMVSYDKEHRNNHHVQKYVGHAPN 819
Fly 820 QNLTHGH---NAKKSPSYGIPSVIGSMPHISDNSLDRSSPGISYATPPLPSGPHGQHNSGSATRR 881
Fly 882 PGDD------SLVGHYASGAPPAKRPKPYCRDVSFSEASSKCTISDAAFFDKVRKALRSPEVYDN 940
Fly 941 FLRCLTLFNQEIVSKTELLGLVSPFLMKFPDLLRWFTDFLGPPSGQPAGGLIDGMPLAATQRQGG 1005
Fly 1006 GSSNSSHDRGTSHQSAAEYVQDVDLSSCKRLGASYCALPQSTVPKKCSGRTAL---CREVLNDKW 1067
Fly 1068 VSFPTWASEDSTFVTSRKTQFEETIYRNIHRTEDERFELDLVIEVNSATIRVLENLQKKMSRMST 1132
Fly 1133 EELSKFHLDDHLGGTSQTIHQRAIHRIYGDKSGEIITGMKKNPFVAVPIVLKRLKVKEEEWREAQ 1197
Fly 1198 KTFNKQWREQNEKYYLKS---LDHQAINFKPNDMKALRSKSLFNEIETLYDERHDQEDDAMEPFG 1259
Fly 1260 PHLVLPY-KDKTILDDAANLLIHHVKRQTGIQKQEKQKIKQII---RQFVPDLFFAPRQPLSDDE 1320
Fly 1321 RDDAFPFLVDDN------TKMDVDSPLGRTESSTRNAKSTPSESASPARSNASTSSVTPAGIKKE 1379
Fly 1380 TDDSKATTGSFAPASSATASSATPVDDATPSTSSAAAAASAASSSTVSGTEGKPKDDPLSSHKEE 1444
Fly 1445 GAGSTSSGVATSPRQAQDTAGAGVDVEIKLEHPADFSNPKLLPPHAHGQREDESYTLFFANNNWY 1509
Fly 1510 LFLRLHAILCDRLHVMYER-ARLLAIEE-------ERCRVNRRESTATALRLKPKPEIQ------ 1560
Fly 1561 ---VEDY----------YPTFLDMLKNVLDGNMDSNTFEDTMREMFGIYAYISFTLDKVVSNAVR 1612
Fly 1613 QLQY--CVTERAALDCVELFATEQRRGCTGGFCRDAHKTFDRE---MSYQRKAESILNEENCFKV 1672
Fly 1673 YIYKIDCR--VTIELLDSEPEEVDKPAALKAQKFSKYVERLANPALGGGGNTGRS--DSALGNDS 1733
Fly 1734 VVDGSDIKTEADEDTAELRYREGGIGGA 1761 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Sin3A | NP_001246282.1 | Sin3 | 238..1719 | CDD:227889 | 305/1596 (19%) |
PAH | 291..335 | CDD:280780 | 20/43 (47%) | ||
PAH | 588..645 | CDD:280780 | 10/56 (18%) | ||
PAH | 936..980 | CDD:280780 | 0/43 (0%) | ||
Sin3_corepress | 1034..1133 | CDD:285494 | 37/101 (37%) | ||
Sin3a_C | 1502..>1710 | CDD:293484 | 44/241 (18%) | ||
sin-3 | NP_001122442.1 | Sin3 | 271..>1062 | CDD:227889 | 226/1082 (21%) |
PAH | 306..349 | CDD:280780 | 20/42 (48%) | ||
HDAC_interact | 801..900 | CDD:214808 | 38/103 (37%) | ||
Sin3a_C | 1146..>1341 | CDD:293484 | 40/209 (19%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 1 | 0.930 | - | - | C160166699 | |
Domainoid | 1 | 1.000 | 65 | 1.000 | Domainoid score | I6676 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 246 | 1.000 | Inparanoid score | I2040 |
Isobase | 1 | 0.950 | - | 0 | Normalized mean entropy | S4104 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D198862at33208 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0000820 | |
OrthoInspector | 1 | 1.000 | - | - | oto19603 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_101145 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR12346 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R1023 |
SonicParanoid | 1 | 1.000 | - | - | X631 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
13 | 12.880 |