DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-b and clcn5

DIOPT Version :9

Sequence 1:NP_610798.1 Gene:ClC-b / 36381 FlyBaseID:FBgn0033755 Length:813 Species:Drosophila melanogaster
Sequence 2:NP_001039210.1 Gene:clcn5 / 734069 XenbaseID:XB-GENE-5957241 Length:808 Species:Xenopus tropicalis


Alignment Length:892 Identity:235/892 - (26%)
Similarity:376/892 - (42%) Gaps:239/892 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 RRATLSGNNHLLDDSQPLLMG--------NNSVPP-DIPINGSAGSPNRN-INSSEPIFHLRSRT 106
            ||::|:..:....|...:.:.        .:.||| |..:.|...|.|.| ::....:.......
 Frog     7 RRSSLTSFHSSTSDEDMVEINEATLDFTMTDDVPPIDRDMAGGFVSYNGNGLHGPSKVMDFLDVP 71

  Fly   107 AAASTPNYESLDYEVCENTLFQDEQRKRLTERFSLRKDIIR--------WIIFIQIGIITALIAC 163
            ...:..::.::|: |.|.:..:|..|:.|::.......::|        |::.:.||:....:|.
 Frog    72 GVGTYEDFNTIDW-VREKSRDRDRHREILSKSKESTWALLRSISDAFSGWMLMLLIGLTAGSLAG 135

  Fly   164 TIDI-------IIEELSIRKYTFLYNSV---KENVPLSDASD-------RDLLI-------PY-- 202
            .|||       :.|.:.:..:.|.:...   ..||...|.::       ..|::       ||  
 Frog   136 LIDISSHWMTDLKEGICLPWFWFNHEQCCWQSNNVTFEDRNNCPEWRSWSQLVLGRSEGAFPYIL 200

  Fly   203 ------LYWLLFSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLNGVKIPRIVRIKTLAVKAIGVI 261
                  |:.||||::.|    .:|....|...|||||::|:.|:|..|...:...||.:|.:.::
 Frog   201 NYFMYVLWALLFSLLAV----LLVRNFAPYACGSGIPEIKTILSGFIIRGYLGKWTLIIKTMTLV 261

  Fly   262 TSVVGGLAGGKEGPMIH----AGAVVAAGISQGKSTTFLKDFRIFKAFRDDHEKRDFVL-GGGAA 321
            .:|..||:.|||||:||    .|.::.               .:|..:|.:..||..|| ...||
 Frog   262 LAVSSGLSLGKEGPLIHVACCCGNILC---------------HLFTKYRKNEAKRREVLSAAAAA 311

  Fly   322 GVSAAFGAPIGGMLFSLEEAASFWNQNLIWRTLVASIISVFTLNIVLSAYHGLNDF--TFTGLFN 384
            |||.||||||||:||||||.:.::....:||:..|::::.|||       ..:|.|  :...||.
 Frog   312 GVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFTL-------RSINPFGNSRLVLFY 369

  Fly   385 LGKFDTPLKFDYFELPIFMILGVTGGLLGA-------AW--NSLNTKINKFRKRFIPWKIGKVLE 440
            : :|..|  :...||..|::||:.|||.||       ||  ....||:.::          .|.|
 Frog   370 V-EFHAP--WHLLELIPFILLGIFGGLWGAFFIRGNIAWCQRRKTTKLGRY----------PVAE 421

  Fly   441 AVVVAMMGVTLAC-----------LMIYFINDCRPLGNDPTNNPVQLFCEDNEYN---------- 484
            .:||..:...||.           ::....|||..|.:....:.|      |:||          
 Frog   422 VLVVTAITAVLAFPNDYTRMSSSEMISELFNDCGLLDSSKLCDYV------NDYNNTKGGNLPDR 480

  Fly   485 -----AVAALWFQTPEATVRSLFHDPPGSHKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALV 544
                 ...|:|                      .|:|..:...|::..|||:.|..|:|||:..|
 Frog   481 AAGNGVYTAMW----------------------QLSLALIFKAVITIFTFGMKVPSGLFIPSMAV 523

  Fly   545 GAAWGRLLAM----LTYY-----VF-----PQAEFLHPGKYALIGAAANLGGVLRMTISLSVILM 595
            ||..||||.:    |::|     :|     ..|:.:.||.||::||||.|||..|||:||.||:.
 Frog   524 GAIMGRLLGVAMEQLSFYHHDWLIFRGWCNQGADCITPGLYAMVGAAACLGGATRMTVSLVVIMF 588

  Fly   596 ETTGVETSFFFPLIIALISAKWVGDYF-NEGIYDTQIQVNHVPMLTWEPLPQYKGLKAREIL--- 656
            |.|| ...:..||:.|.:::|||.|.. .|.|||..|.:|..|.|..:....:|.| |.:::   
 Frog   589 ELTG-GLEYIVPLMAAAMTSKWVADALGRESIYDAHIHLNGYPFLEAKEEFSHKTL-AMDVMRPR 651

  Fly   657 -SKPVICIKIRDSANY--IYEMLKKCDHNGFPVVDDVCGDRRSEGRVCGIILRSQLIVILLKSLY 718
             :.|::.:..:||...  |..::.:..::|||:|..     |...|:.|.:||..||:       
 Frog   652 RNDPILTVITQDSMTVEDIEAIINETTYSGFPIVIS-----RESQRLVGFVLRRDLII------- 704

  Fly   719 VENKRFWLPETSIQTFRDLYPRFPSIKSVRKLDEKINYT-------------------VDLSMFM 764
                                    |::|.||..|.|..|                   :.|...|
 Frog   705 ------------------------SVESARKKQEGIVSTSQIYFTEHTPPQPPTAPPSLKLRAIM 745

  Fly   765 NPSPIRVNPHDSVPRIFQIFRALGLRHLLVINHENRIAGIITRRDFI 811
            :.||..:.....:..:..|||.||||..|| .|..|:.||||::|.:
 Frog   746 DLSPFTITDQTPMEIVVDIFRKLGLRQCLV-THNGRLLGIITKKDVL 791

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-bNP_610798.1 CBS_pair_EriC_assoc_euk_bac 674..811 CDD:239964 38/155 (25%)
ClC_6_like 115..639 CDD:239657 177/620 (29%)
Voltage_CLC 213..620 CDD:279048 142/462 (31%)
CBS 653..811 CDD:223591 42/182 (23%)
clcn5NP_001039210.1 ClC_3_like 127..632 CDD:239656 168/572 (29%)
CBS_pair_voltage-gated_CLC_euk_bac 643..793 CDD:341367 44/187 (24%)
CBS repeat 649..744 CDD:341367 23/130 (18%)
CBS repeat 750..792 CDD:341367 16/43 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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