DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ClC-b and clcn3

DIOPT Version :9

Sequence 1:NP_610798.1 Gene:ClC-b / 36381 FlyBaseID:FBgn0033755 Length:813 Species:Drosophila melanogaster
Sequence 2:XP_012812850.1 Gene:clcn3 / 100216107 XenbaseID:XB-GENE-950794 Length:867 Species:Xenopus tropicalis


Alignment Length:876 Identity:245/876 - (27%)
Similarity:398/876 - (45%) Gaps:205/876 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    47 TSALARRATLSG-----NNHLLDDSQPLLMGNNSVPPDIPI-NGSAGSPNRNINSS--------E 97
            |||.:....|.|     :.|.|:|.. ||.|:.||.....: ||.|      |||:        |
 Frog    20 TSASSDEELLDGAGGMMDFHTLEDDN-LLDGDASVGTHYTMTNGGA------INSTTHLLDLLDE 77

  Fly    98 PIFHLRSRTAAASTPNYESLDY--EVCENTLFQDEQRKRLTER-----FSLRKDII----RWIIF 151
            ||      ....:..::.::|:  |.|::.    |:.:|:..:     :.|.|.:.    .|::.
 Frog    78 PI------PGVGTYDDFHTIDWVREKCKDR----ERHRRINSKKKESAWELAKSLYDAWSGWLVV 132

  Fly   152 IQIGIITALIACTIDIIIEELSIRKYTFLYNSVKENVPLS-----------DASD---------- 195
            ...|:.:..:|..|||..:.::         .:||.:.::           |:.:          
 Frog   133 TLTGLASGALAGFIDIAADWMA---------DLKEGICMTAFWFNHEQCCWDSKEATFEERDKCP 188

  Fly   196 -----RDLL--------------IPYLYWLL-FSIVPVAFGAAMVTYIEPITAGSGIPQVKSYLN 240
                 .||:              |.|::|.| |:.:.|    .:|....|...|||||::|:.|:
 Frog   189 QWQTWADLIIGQAEGPGSYIMNYIMYIFWALSFAFLAV----CLVKVFAPYACGSGIPEIKTILS 249

  Fly   241 GVKIPRIVRIKTLAVKAIGVITSVVGGLAGGKEGPMIHAGAVVAAGISQGKSTTFLKDFRIFKAF 305
            |..|...:...||.:|.:.::.:|..||:.|||||::|.....      |...::|    ..|..
 Frog   250 GFIIRGYLGKWTLMIKTVTLVLAVASGLSLGKEGPLVHVACCC------GNIFSYL----FPKYS 304

  Fly   306 RDDHEKRDFVLGGGAAGVSAAFGAPIGGMLFSLEEAASFWNQNLIWRTLVASIISVFTLNIVLSA 370
            .::.:||:.:....|||||.||||||||:||||||.:.::....:||:..|::::.|.|      
 Frog   305 TNEAKKREVLSAASAAGVSVAFGAPIGGVLFSLEEVSYYFPLKTLWRSFFAALVAAFVL------ 363

  Fly   371 YHGLNDF--TFTGLFNLGKFDTPLKFDYFELPIFMILGVTGGLLGAAWNSLNTKINKFRK--RFI 431
             ..:|.|  :...||.: ::.||  :..|||..|::|||.|||.||.:...|....:.||  || 
 Frog   364 -RSINPFGNSRLVLFYV-EYHTP--WYLFELIPFILLGVFGGLWGAFFIRANIAWCRRRKTTRF- 423

  Fly   432 PWKIGK--VLEAVVVAMMGVTLAC-----------LMIYFINDCRPLGNDPTNNPVQLFCE-DNE 482
                ||  |||.::||.:...:|.           |:.....||.||.:..       .|: .|:
 Frog   424 ----GKYPVLEVMLVAAITAVIAFPNPYTRFNTSQLIKELFTDCGPLESSS-------LCDYKND 477

  Fly   483 YNAVAALWFQTPEATVRSLFHDPPGS---HKILTLALFTVVYYVLSCATFGLNVSLGVFIPTALV 544
            .|:         ...|..:...|.|:   ..|..|.|..|...:::..|||:.|..|:|||:..:
 Frog   478 MNS---------SKIVDDIPDRPAGTGVYSAIWQLCLALVFKIIMTVFTFGIKVPSGLFIPSMAI 533

  Fly   545 GAAWGRLLAM----LTYY-----VFPQ-----AEFLHPGKYALIGAAANLGGVLRMTISLSVILM 595
            ||..||::.:    |.||     :|.:     |:.:.||.||::||||.||||.|||:||.||:.
 Frog   534 GAIAGRIVGIAVEQLAYYHHDWFIFKEWCEVGADCITPGLYAMVGAAACLGGVTRMTVSLVVIVF 598

  Fly   596 ETTGVETSFFFPLIIALISAKWVGDYF-NEGIYDTQIQVNHVPMLTWEPLPQYKGLKAREIL--- 656
            |.|| ...:..||:.|::::|||||.| .||||:..|::|..|.|..:....:..| ||:::   
 Frog   599 ELTG-GLEYIVPLMAAVMTSKWVGDAFGREGIYEAHIRLNGYPFLDAKEEFTHTTL-ARDVMRPR 661

  Fly   657 -SKPVICIKIRD--SANYIYEMLKKCDHNGFPVVDDVCGDRRSEGRVCGIILRSQLIVILLKSLY 718
             |.|.:.:..:|  :.:.:..::....:|||||:..     :...|:.|..||..|      :|.
 Frog   662 RSDPPLAVLTQDNMTVDDVESLINDTSYNGFPVIMS-----KESQRLVGFALRRDL------TLA 715

  Fly   719 VEN---KRFWLPETSIQTFRDLYPRFPSIKSVRKLDEKINYTVDLSMFMNPSPIRVNPHDSVPRI 780
            :||   |:..:..:|...|....|..|: :|.|.|  |:...:|:      ||..|.....:..:
 Frog   716 IENARKKQEGIVGSSRVCFAQHTPSLPA-ESPRPL--KLRSILDM------SPFTVTDQTPMEIV 771

  Fly   781 FQIFRALGLRHLLVINHENRIAGIITRRDFI 811
            ..:||.||||..|| .|...:.||||:::.:
 Frog   772 VDLFRKLGLRQCLV-THNGTVLGIITKKNIL 801

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ClC-bNP_610798.1 CBS_pair_EriC_assoc_euk_bac 674..811 CDD:239964 39/139 (28%)
ClC_6_like 115..639 CDD:239657 177/611 (29%)
Voltage_CLC 213..620 CDD:279048 144/441 (33%)
CBS 653..811 CDD:223591 43/166 (26%)
clcn3XP_012812850.1 ClC_3_like 136..642 CDD:239656 169/560 (30%)
CBS_pair_voltage-gated_CLC_euk_bac 653..801 CDD:341367 45/169 (27%)
CBS repeat 659..754 CDD:341367 25/108 (23%)
CBS repeat 760..801 CDD:341367 14/41 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000220
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.000

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